iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Bta-012368

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

E3 ubiquitin-protein ligase TRIM56

Genbank Nucleotide ID

DAAA02058268

Gene Name

TRIM56

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSBTAG00000012038.5	ENSBTAT00000015969.5	ENSBTAP00000015969.5

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	6.30e-06	26.8	21	60

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C iCle ++  p++lpC H++++dCl ++      +  + rCP Cr
   Q: 21   CKICLEQLRV-PKTLPCLHTYCQDCLAQL-----AEGSRLRCPECR 60
           99******66.***************555.....499999*****8 PP

Organism

Bos taurus

Protein Sequence
(Fasta)

MVSQGSSPSL LEALSSDFLA CKICLEQLRV PKTLPCLHTY CQDCLAQLAE GSRLRCPECR 60
ESVPVPPAGV AAFKTNFFVN GLLDLVKARA GGDLRAGKPA CALCPLMGGA SAGGPATARC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTTTCCC AGGGCTCCTC ACCATCCCTC CTGGAGGCCC TGAGCAGCGA CTTCCTGGCC 60
TGTAAAATCT GCCTGGAGCA ACTGCGGGTG CCCAAAACGC TGCCCTGCCT GCACACCTAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR027370--Znf-RING_LisH
IPR000315--Znf_B-box
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS50119--ZF_BBOX
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00643--zf-B_box
PF13445--zf-RING_UBOX

SMART

SM00336--BBOX
SM00184--RING

Gene Ontology

GO:0005622--C:intracellular
GO:0003723--F:RNA binding
GO:0008270--F:zinc ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001496	Ailuropoda melanoleuca	88.17	0.00e+00	1139.00
IUUC-Aca-004996	Anolis carolinensis	49.59	2.00e-76	280.00
IUUC-Cja-019698	Callithrix jacchus	85.96	0.00e+00	1157.00
IUUC-Csa-023090	Chlorocebus sabaeus	85.03	0.00e+00	1097.00
IUUC-Dno-030051	Dasypus novemcinctus	78.42	0.00e+00	964.00
IUUC-Ete-032312	Echinops telfairi	88.48	3.00e-95	340.00
IUUC-Eca-033253	Equus caballus	94.49	9.00e-111	392.00
IUUC-Eeu-034772	Erinaceus europaeus	68.63	3.00e-73	268.00
IUUC-Fca-036198	Felis catus	76.09	0.00e+00	942.00
IUUC-Ggo-045486	Gorilla gorilla	85.83	0.00e+00	1110.00
IUUC-Hsa-046238	Homo sapiens	85.56	0.00e+00	1107.00
IUUC-Itr-048481	Ictidomys tridecemlineatus	86.08	0.00e+00	1085.00
IUUC-Loc-052915	Lepisosteus oculatus	30.41	7.00e-73	268.00
IUUC-Laf-053640	Loxodonta africana	85.87	0.00e+00	1060.00
IUUC-Mcc-055540	Macaca mulatta	85.17	0.00e+00	1111.00
IUUC-Mmr-060840	Microcebus murinus	84.90	0.00e+00	1120.00
IUUC-Mmu-064375	Mus musculus	80.57	0.00e+00	1045.00
IUUC-Mpu-066797	Mustela putorius furo	86.64	0.00e+00	1128.00
IUUC-Mlu-067996	Myotis lucifugus	87.55	0.00e+00	1151.00
IUUC-Nle-069238	Nomascus leucogenys	92.65	4.00e-116	410.00
IUUC-Oga-089156	Otolemur garnettii	82.67	0.00e+00	1135.00
IUUC-Oar-090056	Ovis aries	88.39	0.00e+00	1142.00
IUUC-Ptr-090837	Pan troglodytes	81.57	0.00e+00	645.00
IUUC-Psi-093493	Pelodiscus sinensis	44.41	1.00e-57	217.00
IUUC-Pab-097607	Pongo abelii	86.75	0.00e+00	1123.00
IUUC-Pva-102758	Pteropus vampyrus	83.77	0.00e+00	1099.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence