iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Itr-048247

Ensembl Protein ID

ENSSTOP00000008277.2

UniProt Accession

I3MD65; I3MD65_ICTTR

Genbank Protein ID

ENSSTOP00000008277

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AGTP01071254

Gene Name

UPF1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSTOG00000009196.2	ENSSTOT00000009227.2	ENSSTOP00000008277.2

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/Other	57.27	0.00e+00	958.00	IUUC-Sce-106206

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Ictidomys tridecemlineatus

Protein Sequence
(Fasta)

YCGIHDPACV VYCNTSKKWF CNGRGNTSGS HIVNHLVRAK CKEVTLHKDG PLGETVLECY 60
NCGCRNVFLL GFIPAKADSV VVLLCRQPCA SQSSLKDINW DSSQWQPLIQ DRCFLSWLVK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGGTTGGACC TGAGGGCATC CTGCAGAATG GGGCTGTGGA CGACAGTGTG GCTAAGACCA 60
GCCAGCTCTT GGCAGAGTTG AACTTCGAAG AAGATGAAGA AGATACCTAT TACACAAAGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR006935--Helicase/UvrB_N
IPR027417--P-loop_NTPase
IPR018999--RNA-helicase_UPF1_UPF2-interct

Pfam

PF04851--ResIII
PF09416--UPF1_Zn_bind

Gene Ontology

GO:0000785--C:chromatin
GO:0005737--C:cytoplasm
GO:0035145--C:exon-exon junction complex
GO:0000784--C:nuclear chromosome, telomeric region
GO:0005654--C:nucleoplasm
GO:0044530--C:supraspliceosomal complex
GO:0005524--F:ATP binding
GO:0004004--F:ATP-dependent RNA helicase activity
GO:0003682--F:chromatin binding
GO:0003723--F:RNA binding
GO:0042162--F:telomeric DNA binding
GO:0008270--F:zinc ion binding
GO:0061158--P:3'-UTR-mediated mRNA destabilization
GO:0071347--P:cellular response to interleukin-1
GO:0071222--P:cellular response to lipopolysaccharide
GO:0006281--P:DNA repair
GO:0009048--P:dosage compensation by inactivation of X chromosome
GO:0071044--P:histone mRNA catabolic process
GO:0000294--P:nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay
GO:0000184--P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0061014--P:positive regulation of mRNA catabolic process
GO:0006449--P:regulation of translational termination
GO:0032201--P:telomere maintenance via semi-conservative replication

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000680	Aegilops tauschii	70.47	0.00e+00	1167.00
IUUC-Aml-002008	Ailuropoda melanoleuca	99.70	0.00e+00	2004.00
IUUC-Atr-002632	Amborella trichopoda	72.75	0.00e+00	1248.00
IUUC-Apl-003997	Anas platyrhynchos	98.41	0.00e+00	1962.00
IUUC-Aca-004322	Anolis carolinensis	31.55	6.00e-54	206.00
IUUC-Aly-006521	Arabidopsis lyrata	71.96	0.00e+00	1224.00
IUUC-Ath-007059	Arabidopsis thaliana	71.71	0.00e+00	1225.00
IUUC-Ago-007801	Ashbya gossypii	56.63	0.00e+00	935.00
IUUC-Acl-008312	Aspergillus clavatus	68.36	0.00e+00	1175.00
IUUC-Afl-008429	Aspergillus flavus	67.99	0.00e+00	1172.00
IUUC-Afu-009092	Aspergillus fumigatus	64.19	0.00e+00	1174.00
IUUC-Ani-009317	Aspergillus nidulans	68.48	0.00e+00	1179.00
IUUC-Ang-009783	Aspergillus niger	59.98	0.00e+00	1177.00
IUUC-Aor-010178	Aspergillus oryzae	67.99	0.00e+00	1172.00
IUUC-Ate-010294	Aspergillus terreus	60.50	0.00e+00	1182.00
IUUC-Ame-010774	Astyanax mexicanus	74.31	0.00e+00	1228.00
IUUC-Bgr-012293	Blumeria graminis	66.71	0.00e+00	1167.00
IUUC-Bta-012382	Bos taurus	99.70	0.00e+00	2004.00
IUUC-Bci-013937	Botrytis cinerea	67.08	0.00e+00	1162.00
IUUC-Bdi-014612	Brachypodium distachyon	70.48	0.00e+00	1246.00
IUUC-Bol-015145	Brassica oleracea	70.87	0.00e+00	1215.00
IUUC-Bra-017370	Brassica rapa	69.40	0.00e+00	1181.00
IUUC-Cel-018240	Caenorhabditis elegans	58.21	0.00e+00	978.00
IUUC-Cja-019892	Callithrix jacchus	98.51	0.00e+00	1969.00
IUUC-Cfa-020700	Canis familiaris	99.70	0.00e+00	2004.00
IUUC-Cpo-021510	Cavia porcellus	98.71	0.00e+00	2019.00
IUUC-Cre-022731	Chlamydomonas reinhardtii	58.50	0.00e+00	982.00
IUUC-Csa-023665	Chlorocebus sabaeus	98.51	0.00e+00	1971.00
IUUC-Cin-025798	Ciona intestinalis	82.98	0.00e+00	1319.00
IUUC-Csv-025901	Ciona savignyi	74.41	0.00e+00	1524.00
IUUC-Cgl-026653	Colletotrichum gloeosporioides	59.13	0.00e+00	1140.00
IUUC-Cne-027014	Cryptococcus neoformans	63.63	0.00e+00	1185.00
IUUC-Dre-028705	Danio rerio	94.64	0.00e+00	1922.00
IUUC-Dor-030369	Dipodomys ordii	95.32	0.00e+00	1913.00
IUUC-Dme-031767	Drosophila melanogaster	75.35	0.00e+00	1338.00
IUUC-Ete-032800	Echinops telfairi	33.80	3.00e-53	203.00
IUUC-Eca-033840	Equus caballus	98.51	0.00e+00	1967.00
IUUC-Fca-035466	Felis catus	99.60	0.00e+00	1993.00
IUUC-Fal-037548	Ficedula albicollis	97.91	0.00e+00	1923.00
IUUC-Fox-038023	Fusarium oxysporum	59.28	0.00e+00	1123.00
IUUC-Gmo-039285	Gadus morhua	93.74	0.00e+00	1892.00
IUUC-Ggr-039810	Gaeumannomyces graminis	66.50	0.00e+00	1157.00
IUUC-Gga-040972	Gallus gallus	98.11	0.00e+00	1951.00
IUUC-Gac-042075	Gasterosteus aculeatus	94.05	0.00e+00	1925.00
IUUC-Gma-042713	Glycine max	72.69	0.00e+00	1269.00
IUUC-Ggo-045398	Gorilla gorilla	98.51	0.00e+00	1968.00
IUUC-Hsa-046152	Homo sapiens	98.51	0.00e+00	1971.00
IUUC-Hvu-047555	Hordeum vulgare	71.40	0.00e+00	726.00
IUUC-Kpa-049205	Komagataella pastoris	50.00	0.00e+00	758.00
IUUC-Lch-049587	Latimeria chalumnae	97.27	0.00e+00	1316.00
IUUC-Lpe-051059	Leersia perrieri	72.94	0.00e+00	1249.00
IUUC-Loc-051911	Lepisosteus oculatus	94.83	0.00e+00	1901.00
IUUC-Lma-053007	Leptosphaeria maculans	66.01	0.00e+00	1144.00
IUUC-Laf-054234	Loxodonta africana	98.91	0.00e+00	1981.00
IUUC-Mcc-054762	Macaca mulatta	99.60	0.00e+00	2002.00
IUUC-Meu-056677	Macropus eugenii	93.92	0.00e+00	887.00
IUUC-Mor-057147	Magnaporthe oryzae	66.34	0.00e+00	1155.00
IUUC-Mpo-057314	Magnaporthe poae	66.50	0.00e+00	1158.00
IUUC-Mtr-058329	Medicago truncatula	72.69	0.00e+00	1269.00
IUUC-Mla-059094	Melampsora laricipopulina	66.67	0.00e+00	664.00
IUUC-Mga-060126	Meleagris gallopavo	97.91	0.00e+00	1942.00
IUUC-Mvi-060373	Microbotryum violaceum	66.59	0.00e+00	1254.00
IUUC-Mmr-060628	Microcebus murinus	99.50	0.00e+00	1999.00
IUUC-Mdo-061858	Monodelphis domestica	97.91	0.00e+00	1955.00
IUUC-Mmu-064116	Mus musculus	97.81	0.00e+00	1958.00
IUUC-Mac-065136	Musa acuminata	71.62	0.00e+00	1233.00
IUUC-Mpu-066463	Mustela putorius furo	98.61	0.00e+00	1972.00
IUUC-Mlu-068098	Myotis lucifugus	98.41	0.00e+00	1967.00
IUUC-Nfi-068370	Neosartorya fischeri	64.19	0.00e+00	1175.00
IUUC-Ncr-068792	Neurospora crassa	64.45	0.00e+00	1148.00
IUUC-Nle-070102	Nomascus leucogenys	98.41	0.00e+00	1960.00
IUUC-Opr-070620	Ochotona princeps	90.25	0.00e+00	1791.00
IUUC-Ont-072685	Oreochromis niloticus	94.23	0.00e+00	1891.00
IUUC-Oan-073665	Ornithorhynchus anatinus	98.91	0.00e+00	1956.00
IUUC-Ocu-074154	Oryctolagus cuniculus	33.41	3.00e-55	210.00
IUUC-Oba-075075	Oryza barthii	63.26	0.00e+00	1004.00
IUUC-Obr-076183	Oryza brachyantha	66.50	0.00e+00	1081.00
IUUC-Ogl-077691	Oryza glaberrima	68.07	0.00e+00	1250.00
IUUC-Ogu-078423	Oryza glumaepatula	68.07	0.00e+00	1250.00
IUUC-Oin-080107	Oryza indica	68.07	0.00e+00	1249.00
IUUC-Olo-080269	Oryza longistaminata	67.59	0.00e+00	1185.00
IUUC-Ome-081779	Oryza meridionalis	68.07	0.00e+00	1249.00
IUUC-Oni-082366	Oryza nivara	68.07	0.00e+00	1250.00
IUUC-Opu-083958	Oryza punctata	63.76	0.00e+00	1253.00
IUUC-Oru-084182	Oryza rufipogon	68.07	0.00e+00	1249.00
IUUC-Osa-085285	Oryza sativa	68.07	0.00e+00	1250.00
IUUC-Ola-086954	Oryzias latipes	92.09	0.00e+00	1850.00
IUUC-Olu-087685	Ostreococcus lucimarinus	57.14	0.00e+00	939.00
IUUC-Oga-088591	Otolemur garnettii	98.61	0.00e+00	1972.00
IUUC-Oar-089417	Ovis aries	99.28	0.00e+00	1911.00
IUUC-Ptr-091510	Pan troglodytes	97.74	0.00e+00	1699.00
IUUC-Pan-091886	Papio anubis	98.51	0.00e+00	1971.00
IUUC-Psi-093755	Pelodiscus sinensis	97.91	0.00e+00	1427.00
IUUC-Pma-094470	Petromyzon marinus	89.28	0.00e+00	1781.00
IUUC-Pno-094963	Phaeosphaeria nodorum	66.13	0.00e+00	1145.00
IUUC-Ppa-095479	Physcomitrella patens	72.69	0.00e+00	1264.00
IUUC-Pfo-097456	Poecilia formosa	94.04	0.00e+00	1897.00
IUUC-Pab-098075	Pongo abelii	92.54	0.00e+00	1815.00
IUUC-Pop-099557	Populus trichocarpa	62.53	0.00e+00	1258.00
IUUC-Pca-100717	Procavia capensis	100.00	7.00e-176	610.00
IUUC-Ppe-101675	Prunus persica	63.08	0.00e+00	1274.00
IUUC-Pva-103029	Pteropus vampyrus	98.21	0.00e+00	1255.00
IUUC-Pgr-103318	Puccinia graminis	64.58	0.00e+00	1191.00
IUUC-Ptt-103956	Puccinia triticina	64.32	0.00e+00	1189.00
IUUC-Pte-104399	Pyrenophora teres	61.56	0.00e+00	1154.00
IUUC-Pyt-104749	Pyrenophora triticirepentis	61.34	0.00e+00	1152.00
IUUC-Rno-105784	Rattus norvegicus	97.91	0.00e+00	1998.00
IUUC-Sce-106206	Saccharomyces cerevisiae	57.27	0.00e+00	927.00
IUUC-Sha-106566	Sarcophilus harrisii	98.81	0.00e+00	1983.00
IUUC-Sja-107721	Schizosaccharomyces japonicus	64.11	0.00e+00	1087.00
IUUC-Spo-108258	Schizosaccharomyces pombe	60.54	0.00e+00	1041.00
IUUC-Ssl-108640	Sclerotinia sclerotiorum	63.71	0.00e+00	1024.00
IUUC-Sit-109760	Setaria italica	62.72	0.00e+00	1249.00
IUUC-Sly-111807	Solanum lycopersicum	73.06	0.00e+00	1275.00
IUUC-Stu-112869	Solanum tuberosum	67.37	0.00e+00	1266.00
IUUC-Sar-112950	Sorex araneus	38.31	3.00e-43	170.00
IUUC-Sbi-114863	Sorghum bicolor	62.91	0.00e+00	1248.00
IUUC-Sre-115092	Sporisorium reilianum	66.67	0.00e+00	1239.00
IUUC-Tgu-117214	Taeniopygia guttata	91.43	0.00e+00	1517.00
IUUC-Tru-118386	Takifugu rubripes	91.10	0.00e+00	1869.00
IUUC-Tsy-119550	Tarsius syrichta	95.93	6.00e-165	574.00
IUUC-Tni-120212	Tetraodon nigroviridis	92.06	0.00e+00	1821.00
IUUC-Tca-121353	Theobroma cacao	72.82	0.00e+00	1269.00
IUUC-Tre-122245	Trichoderma reesei	34.94	1.00e-52	202.00
IUUC-Tvi-122452	Trichoderma virens	58.78	0.00e+00	1105.00
IUUC-Tae-123692	Triticum aestivum	72.20	0.00e+00	1242.00
IUUC-Tur-126770	Triticum urartu	60.55	0.00e+00	1066.00
IUUC-Tme-126956	Tuber melanosporum	68.60	0.00e+00	1182.00
IUUC-Tbe-127873	Tupaia belangeri	33.89	2.00e-50	193.00
IUUC-Ttr-128212	Tursiops truncatus	94.43	0.00e+00	1848.00
IUUC-Uma-129327	Ustilago maydis	65.98	0.00e+00	1230.00
IUUC-Vda-129858	Verticillium dahliae	64.95	0.00e+00	1115.00
IUUC-Vpa-130743	Vicugna pacos	33.89	5.00e-51	196.00
IUUC-Vvi-131222	Vitis vinifera	72.57	0.00e+00	1245.00
IUUC-Xtr-131800	Xenopus tropicalis	83.45	0.00e+00	1627.00
IUUC-Xma-133216	Xiphophorus maculatus	93.94	0.00e+00	1895.00
IUUC-Yli-134482	Yarrowia lipolytica	53.34	0.00e+00	882.00
IUUC-Zma-134802	Zea mays	72.69	0.00e+00	1248.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence