iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0006s12180	POPTR_0006s12180.3	POPTR_0006s12180.3
POPTR_0006s12180	POPTR_0006s12180.2	POPTR_0006s12180.2
POPTR_0006s12180	POPTR_0006s12180.1	POPTR_0006s12180.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	2.90e-09	38.1	120	163

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           + C +C++gg+    l+ C+ C ++fH++C +++   ++p+ + w+C+ C++
   Q: 120  DLCIICADGGN----LLLCDGCPRAFHKGCASIP---TVPSGD-WYCQYCQN 163
           68*********....*******************...*****7.******85 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MSKCFKNTSG GVSSQNQWKI TTKDQRLHRL VFEEGGLPDG TELAYYARGQ KLLGGYKRGF 60
GILCRCCNCE VSPSMFEAHA GWATRKKPYA YIYTSNGVSL HELAISLSKS RKYSSRDNDD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTAGGTTGT ACTCTTCAGT GGTGTTTCAG TTTATGTTCT AGTTGGCAGT ATGGCATGTG 60
CCTTTTGGTA GATGCTTACA CATGTTTAAT CTGCATTAAT TCAGACCAGA AGAACAAGAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR016181--Acyl_CoA_acyltransferase
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF00628--PHD

SMART

SM00249--PHD

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0008270--F:zinc ion binding

KEGG

pop:POPTR_0006s12180g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-007103	Arabidopsis thaliana	65.87	0.00e+00	670.00
IUUC-Ame-011506	Astyanax mexicanus	39.13	3.00e-12	67.00
IUUC-Bgr-012025	Blumeria graminis	40.00	4.00e-07	50.10
IUUC-Bci-013740	Botrytis cinerea	29.45	9.00e-15	75.50
IUUC-Bol-015801	Brassica oleracea	63.71	0.00e+00	654.00
IUUC-Bra-017395	Brassica rapa	62.79	0.00e+00	646.00
IUUC-Cin-025596	Ciona intestinalis	25.54	7.00e-11	61.60
IUUC-Dor-030396	Dipodomys ordii	32.20	5.00e-10	59.70
IUUC-Dse-031258	Dothistroma septosporum	44.00	4.00e-07	50.10
IUUC-Fso-038262	Fusarium solani	25.31	3.00e-10	60.80
IUUC-Gma-043681	Glycine max	67.98	0.00e+00	702.00
IUUC-Laf-054279	Loxodonta africana	36.26	4.00e-10	60.10
IUUC-Mtr-058688	Medicago truncatula	52.41	5.00e-131	461.00
IUUC-Ncr-068727	Neurospora crassa	27.06	7.00e-08	53.10
IUUC-Oin-079045	Oryza indica	53.64	1.00e-119	424.00
IUUC-Olo-080735	Oryza longistaminata	50.23	6.00e-114	404.00
IUUC-Ppe-101775	Prunus persica	74.84	0.00e+00	780.00
IUUC-Sly-110905	Solanum lycopersicum	66.80	0.00e+00	700.00
IUUC-Stu-112824	Solanum tuberosum	67.16	0.00e+00	693.00
IUUC-Sar-113615	Sorex araneus	36.26	1.00e-10	62.00
IUUC-Tsy-118904	Tarsius syrichta	36.26	2.00e-10	60.80
IUUC-Tca-121690	Theobroma cacao	74.28	0.00e+00	767.00
IUUC-Tre-121959	Trichoderma reesei	26.51	6.00e-09	56.20
IUUC-Tbe-127354	Tupaia belangeri	36.26	4.00e-10	59.70

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence