iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Loc-052383

Ensembl Protein ID

ENSLOCP00000017225.1

UniProt Accession

W5N9B6; W5N9B6_LEPOC

Genbank Protein ID

ENSLOCP00000017225

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AHAT01029652

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSLOCG00000013965.1	ENSLOCT00000017256.1	ENSLOCP00000017225.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	1.30e-16	60.7	379	424

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           ++C vC++gge    ++ C+ C +++H  Cl+++  e  p+ + w Cp C++
   Q: 379  DYCEVCQQGGE----IILCDTCPRAYHLVCLEPE-LERAPEGK-WSCPHCEK 424
           79*********....9******************.999***97.******86 PP

Organism

Lepisosteus oculatus

Protein Sequence
(Fasta)

MSSPLRGCEE DEGMAVNSEG GDFDEEEDGE DGALDENTSD IYSPAAPRET AAVAAPVKRR 60
EQSDTEAAPR KKKRGPKKKK EPKDGKAPKP RKRKKLDSEV EGDSNREYGE QSDSGASDYA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCCTCTC CTCTTCGAGG CTGTGAGGAA GATGAGGGCA TGGCGGTTAA CTCCGAGGGT 60
GGAGATTTCG ATGAAGAAGA AGACGGGGAA GACGGAGCGC TGGACGAGAA CACAAGCGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR028722--CHD3
IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR009071--HMG_box_dom
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N

SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD

Gene Ontology

GO:0016581--C:NuRD complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding
GO:0007417--P:central nervous system development
GO:0051297--P:centrosome organization
GO:0006325--P:chromatin organization
GO:0048589--P:developmental growth
GO:0006355--P:regulation of transcription, DNA-templated
GO:0007051--P:spindle organization

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aca-004560	Anolis carolinensis	82.53	0.00e+00	2065.00
IUUC-Aly-005645	Arabidopsis lyrata	39.20	2.00e-150	527.00
IUUC-Ath-007406	Arabidopsis thaliana	40.46	2.00e-155	544.00
IUUC-Ame-011352	Astyanax mexicanus	86.97	0.00e+00	2268.00
IUUC-Bta-012868	Bos taurus	76.13	0.00e+00	2499.00
IUUC-Bol-016073	Brassica oleracea	40.48	3.00e-156	546.00
IUUC-Bra-016724	Brassica rapa	40.95	4.00e-158	553.00
IUUC-Cel-018108	Caenorhabditis elegans	57.82	0.00e+00	1316.00
IUUC-Cfa-021055	Canis familiaris	75.60	0.00e+00	2481.00
IUUC-Cpo-021523	Cavia porcellus	76.15	0.00e+00	2516.00
IUUC-Csa-024136	Chlorocebus sabaeus	77.34	0.00e+00	2477.00
IUUC-Csv-025847	Ciona savignyi	55.95	0.00e+00	1396.00
IUUC-Dre-028043	Danio rerio	85.66	0.00e+00	2213.00
IUUC-Dor-030167	Dipodomys ordii	80.42	0.00e+00	2046.00
IUUC-Ete-032757	Echinops telfairi	71.60	0.00e+00	2231.00
IUUC-Eeu-034777	Erinaceus europaeus	74.45	0.00e+00	1848.00
IUUC-Fca-036043	Felis catus	75.80	0.00e+00	2474.00
IUUC-Gmo-038957	Gadus morhua	82.73	0.00e+00	1529.00
IUUC-Gac-041375	Gasterosteus aculeatus	73.45	0.00e+00	2703.00
IUUC-Gma-043999	Glycine max	41.90	0.00e+00	722.00
IUUC-Ggo-045538	Gorilla gorilla	77.56	0.00e+00	2482.00
IUUC-Hsa-045916	Homo sapiens	76.84	0.00e+00	2467.00
IUUC-Itr-048463	Ictidomys tridecemlineatus	76.49	0.00e+00	2460.00
IUUC-Lch-050343	Latimeria chalumnae	80.01	0.00e+00	2026.00
IUUC-Mcc-055499	Macaca mulatta	72.52	0.00e+00	2335.00
IUUC-Meu-056292	Macropus eugenii	74.09	0.00e+00	966.00
IUUC-Mmu-063920	Mus musculus	75.68	0.00e+00	2471.00
IUUC-Mpu-065809	Mustela putorius furo	78.29	0.00e+00	2338.00
IUUC-Mlu-067355	Myotis lucifugus	76.08	0.00e+00	2519.00
IUUC-Nle-069842	Nomascus leucogenys	77.55	0.00e+00	2415.00
IUUC-Opr-070960	Ochotona princeps	76.44	0.00e+00	2450.00
IUUC-Ont-072235	Oreochromis niloticus	83.89	0.00e+00	2254.00
IUUC-Ocu-074438	Oryctolagus cuniculus	72.72	0.00e+00	2365.00
IUUC-Oga-088374	Otolemur garnettii	76.94	0.00e+00	2486.00
IUUC-Oar-089784	Ovis aries	75.60	0.00e+00	2494.00
IUUC-Ptr-090799	Pan troglodytes	76.84	0.00e+00	2476.00
IUUC-Pfo-096265	Poecilia formosa	77.96	0.00e+00	2707.00
IUUC-Pab-098174	Pongo abelii	73.88	0.00e+00	2352.00
IUUC-Sha-107233	Sarcophilus harrisii	75.78	0.00e+00	2458.00
IUUC-Smo-108946	Selaginella moellendorffii	38.72	3.00e-156	547.00
IUUC-Sly-110976	Solanum lycopersicum	43.09	0.00e+00	730.00
IUUC-Ssc-115751	Sus scrofa	75.98	0.00e+00	2492.00
IUUC-Tru-118648	Takifugu rubripes	82.48	0.00e+00	2267.00
IUUC-Tni-120039	Tetraodon nigroviridis	81.27	0.00e+00	2243.00
IUUC-Tbe-128117	Tupaia belangeri	81.70	0.00e+00	1030.00
IUUC-Vpa-130209	Vicugna pacos	92.88	3.00e-170	593.00
IUUC-Vvi-130849	Vitis vinifera	42.23	0.00e+00	730.00
IUUC-Xtr-132833	Xenopus tropicalis	71.51	0.00e+00	2311.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence