iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSONIG00000009292.1	ENSONIT00000011693.1	ENSONIP00000011684.1
ENSONIG00000009292.1	ENSONIT00000011694.1	ENSONIP00000011685.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	4.90e-17	62.3	386	431

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           ++C vC++gge    ++ C+ C +++H  Cl+++  ++ p+ + w Cp C++
   Q: 386  DYCEVCQQGGE----IILCDTCPRAYHLVCLEPE-LDKAPEGK-WSCPHCEK 431
           79*********....9******************.*******7.******86 PP

Organism

Oreochromis niloticus

Protein Sequence
(Fasta)

MSSPLRSCEE DEGMVVNSEG GDFDEEDDDG DLDENASDIN SPAAPRETAT PAAPEEEAEL 60
SDREVPLRKK GRPKKKKDTK KKDKEGKPVK AKKRKKIDSD VERDSDRERD YGENSDSIAS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GACGGATCCA ATGACAGGGA TATAATGTCC TCTCCTCTCC GGTCCTGTGA GGAAGACGAG 60
GGCATGGTGG TTAATTCCGA GGGAGGAGAT TTTGATGAAG AAGACGACGA CGGGGACCTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR028722--CHD3
IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR009071--HMG_box_dom
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N

SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD

Gene Ontology

GO:0016581--C:NuRD complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding
GO:0007417--P:central nervous system development
GO:0051297--P:centrosome organization
GO:0006325--P:chromatin organization
GO:0048589--P:developmental growth
GO:0006355--P:regulation of transcription, DNA-templated
GO:0007051--P:spindle organization

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ame-011352	Astyanax mexicanus	84.87	0.00e+00	2284.00
IUUC-Bol-016073	Brassica oleracea	41.20	2.00e-159	557.00
IUUC-Bra-016724	Brassica rapa	41.32	2.00e-159	558.00
IUUC-Csa-024136	Chlorocebus sabaeus	72.37	0.00e+00	2421.00
IUUC-Csv-025847	Ciona savignyi	53.36	0.00e+00	1372.00
IUUC-Dre-028043	Danio rerio	84.60	0.00e+00	2231.00
IUUC-Gmo-038957	Gadus morhua	85.67	0.00e+00	1594.00
IUUC-Gac-041375	Gasterosteus aculeatus	79.83	0.00e+00	2984.00
IUUC-Lch-050343	Latimeria chalumnae	76.01	0.00e+00	1976.00
IUUC-Loc-052383	Lepisosteus oculatus	81.56	0.00e+00	2180.00
IUUC-Mlu-067355	Myotis lucifugus	74.39	0.00e+00	2335.00
IUUC-Ola-086491	Oryzias latipes	76.63	0.00e+00	2245.00
IUUC-Pfo-096265	Poecilia formosa	90.58	0.00e+00	3065.00
IUUC-Rno-104884	Rattus norvegicus	75.01	0.00e+00	2317.00
IUUC-Smo-108946	Selaginella moellendorffii	38.81	2.00e-158	555.00
IUUC-Tru-118648	Takifugu rubripes	92.26	0.00e+00	2524.00
IUUC-Tni-120039	Tetraodon nigroviridis	90.75	0.00e+00	2497.00
IUUC-Tbe-128117	Tupaia belangeri	76.69	0.00e+00	1023.00
IUUC-Vpa-130209	Vicugna pacos	89.78	4.00e-167	583.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence