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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Ath-006689
Ensembl Protein ID AT5G60940.1
UniProt Accession Q8L4J2; F4K0J5; Q9FME6; CTF50_ARATH
Genbank Protein ID AAM64165.1; BAB10643.1; AED97399.1; AED97400.1; AAM97050.1; AAN15503.1; AAM61334.1
Protein Name Cleavage stimulation factor subunit 50; CF-1 50 kDa subunit; Cleavage stimulation factor 50 kDa subunit
Genbank Nucleotide ID AF515696; AB008269; CP002688; CP002688; AY136384; BT000184; AY084766
Gene Name CSTF50; At5g60940; MSL3.60
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT5G60940 AT5G60940.2 AT5G60940.2
AT5G60940 AT5G60940.1 AT5G60940.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
Protein-protein Interaction
PINAHINTMentha
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 9.60e-23 80.2 122 152
UBD/Beta-Prp 1.50e-54 186.1 120 388
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           H++ v+c +f +d  ++++G+ D +ik++++
   Q: 122  HKSVVRCARFsPDgMFFATGGADTSIKLFEV 152
           9**********997889************97 PP
   

   UBD/Beta-Prp
   S: 7    ghhksvitcvkfspdksllatgsrdgtikvwdvttgkl...........lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlk.. 91
           ++hksv++c  fspd+ ++atg++d +ik+++v + k            +r++++h +++++++f+p++ il+++++D+ ik +d+s+ +  +++k  
   Q: 120  SEHKSVVRCARFSPDGMFFATGGADTSIKLFEVPKVKQmisgdtqarplIRTFYDHAEPINDLDFHPRSTILISSAKDNCIKFFDFSKTTAKRAFKvf 217
           46889****************************998889************************************************88888877777 PP
   S: 92   ghedsvlslsfspsgdklvsGshdrtirvwdletgqclee...tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltggh.tdsvys 185
           + +++v+s+sf+psg++l++G+++ + +++d++t+qc+     ++sg +g++n v+++++g++++++s+D+++rl+d  ++k++r    +h ++ v+s
   Q: 218  QDTHNVRSISFHPSGEFLLAGTDHPIPHLYDVNTYQCFLPsnfPDSGVSGAINQVRYSSTGSIYITASKDGAIRLFDGVSAKCVRSIGNAHgKSEVTS 315
           8*************************************9999*********************************************66662567999 PP
   S: 186  lsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfs..pnderlvsgssDgsiri..Wdlrsgd 255
             f++++++++s ++d+tvklw++ +g++v+++ g ++  ++ ++   + +e+++s   + s  +  Wd r+ d
   Q: 316  AVFTKDQRFVLSSGKDSTVKLWEIGSGRMVKEYLGAKRVKLRSQAIfnDTEEFVISID-EASNEVvtWDARTAD 388
           ***********************************88666555544336666666664.55555445**99987 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     One of the multiple factors required for polyadenylation and 3'-end cleavage of pre-mRNAs. May be responsible for the interaction of CSTF with other factors to form a stable complex on the pre-mRNA.
 One of the multiple factors required for polyadenylation and 3'-end cleavage of pre-mRNAs. May be responsible for the interaction of CSTF with other factors to form a stable complex on the pre-mRNA.
Protein Sequence
(Fasta)
MGNSGDLEQA LQDGNIFRQL NALIVAHLRH HNLSQVASAV ASATMTPLNI EVPPNRLLEL 60
VAKGLAAENN GTLRGVSSSV LLPSSYGSIT TPRTASIDFS VNHAKGSSKT IPKHESKTLS 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-006689|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CCATGTTGAT CTTTGTTTCT GAAGAGGAGG AGGAAGAAGA CGATGGTTGA CACTTGACAG 60
AGTAAGCTCA GAAATGGCGA CTCTGGTTTC GAATTGAACT TGTGAGGAAG GTTTTTAGGG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-006689|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0507--mRNA processing
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat
Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
SMART

SM00320--WD40
Gene Ontology

GO:0005634--C:nucleus
GO:0006397--P:mRNA processing
KEGG ath:AT5G60940
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-002163 Ailuropoda melanoleuca 37.97 1.00e-80 292.00
IUUC-Atr-002687 Amborella trichopoda 56.01 9.00e-156 542.00
IUUC-Apl-003438 Anas platyrhynchos 37.50 4.00e-81 294.00
IUUC-Aca-005178 Anolis carolinensis 37.74 4.00e-81 294.00
IUUC-Aly-005791 Arabidopsis lyrata 96.97 0.00e+00 844.00
IUUC-Ame-011217 Astyanax mexicanus 47.19 1.00e-69 255.00
IUUC-Bta-012619 Bos taurus 37.50 2.00e-80 292.00
IUUC-Bdi-014515 Brachypodium distachyon 61.72 3.00e-152 530.00
IUUC-Bra-017450 Brassica rapa 81.00 0.00e+00 728.00
IUUC-Cel-018151 Caenorhabditis elegans 40.43 8.00e-69 253.00
IUUC-Cja-019304 Callithrix jacchus 38.21 4.00e-81 294.00
IUUC-Cfa-020208 Canis familiaris 37.97 1.00e-80 292.00
IUUC-Cpo-022245 Cavia porcellus 37.97 1.00e-80 292.00
IUUC-Csa-023066 Chlorocebus sabaeus 38.21 4.00e-81 294.00
IUUC-Cho-024770 Choloepus hoffmanni 43.29 6.00e-78 283.00
IUUC-Cin-025621 Ciona intestinalis 36.67 1.00e-67 249.00
IUUC-Csv-026071 Ciona savignyi 41.44 5.00e-75 274.00
IUUC-Dre-028254 Danio rerio 37.12 1.00e-78 286.00
IUUC-Dno-029903 Dasypus novemcinctus 37.97 1.00e-80 292.00
IUUC-Dor-030423 Dipodomys ordii 37.97 2.00e-80 292.00
IUUC-Dme-031993 Drosophila melanogaster 38.20 2.00e-69 255.00
IUUC-Eca-033316 Equus caballus 37.97 1.00e-80 292.00
IUUC-Eeu-035001 Erinaceus europaeus 37.83 8.00e-80 290.00
IUUC-Fca-036447 Felis catus 37.97 1.00e-80 292.00
IUUC-Fal-037601 Ficedula albicollis 37.50 4.00e-81 294.00
IUUC-Gmo-038531 Gadus morhua 36.47 6.00e-74 270.00
IUUC-Gga-040869 Gallus gallus 37.50 5.00e-81 294.00
IUUC-Gac-042380 Gasterosteus aculeatus 38.26 2.00e-78 285.00
IUUC-Gma-043478 Glycine max 67.67 6.00e-180 622.00
IUUC-Ggo-045302 Gorilla gorilla 38.21 4.00e-81 294.00
IUUC-Hsa-045678 Homo sapiens 38.21 4.00e-81 294.00
IUUC-Hvu-047301 Hordeum vulgare 61.65 7.00e-149 519.00
IUUC-Itr-048259 Ictidomys tridecemlineatus 37.97 1.00e-80 292.00
IUUC-Lch-050319 Latimeria chalumnae 37.03 5.00e-79 287.00
IUUC-Lpe-051440 Leersia perrieri 47.65 2.00e-127 448.00
IUUC-Loc-052035 Lepisosteus oculatus 37.74 7.00e-80 290.00
IUUC-Laf-054275 Loxodonta africana 37.97 1.00e-80 292.00
IUUC-Mcc-055857 Macaca mulatta 33.25 2.00e-61 229.00
IUUC-Mtr-058667 Medicago truncatula 64.08 1.00e-167 582.00
IUUC-Mga-059710 Meleagris gallopavo 37.50 5.00e-81 294.00
IUUC-Mmr-060604 Microcebus murinus 37.97 1.00e-80 292.00
IUUC-Mdo-062953 Monodelphis domestica 37.50 2.00e-80 292.00
IUUC-Mmu-064292 Mus musculus 37.74 2.00e-80 292.00
IUUC-Mac-064568 Musa acuminata 70.43 2.00e-143 501.00
IUUC-Mpu-066294 Mustela putorius furo 45.97 1.00e-53 202.00
IUUC-Mlu-067279 Myotis lucifugus 38.06 1.00e-80 292.00
IUUC-Nle-069322 Nomascus leucogenys 38.21 4.00e-81 294.00
IUUC-Opr-070580 Ochotona princeps 37.50 2.00e-80 291.00
IUUC-Ont-072554 Oreochromis niloticus 37.59 1.00e-79 289.00
IUUC-Oan-072856 Ornithorhynchus anatinus 37.26 5.00e-80 290.00
IUUC-Ocu-074150 Oryctolagus cuniculus 34.28 1.00e-64 239.00
IUUC-Oba-075585 Oryza barthii 55.29 3.00e-141 494.00
IUUC-Obr-076069 Oryza brachyantha 60.09 4.00e-144 503.00
IUUC-Ogl-077045 Oryza glaberrima 61.01 2.00e-155 541.00
IUUC-Ogu-078697 Oryza glumaepatula 60.61 3.00e-147 515.00
IUUC-Oin-080119 Oryza indica 61.01 2.00e-155 541.00
IUUC-Olo-081093 Oryza longistaminata 50.64 2.00e-86 313.00
IUUC-Ome-081718 Oryza meridionalis 52.98 1.00e-124 439.00
IUUC-Oni-082072 Oryza nivara 55.29 3.00e-141 494.00
IUUC-Opu-084080 Oryza punctata 54.15 2.00e-118 417.00
IUUC-Oru-085070 Oryza rufipogon 57.24 3.00e-140 492.00
IUUC-Osa-086149 Oryza sativa 61.01 2.00e-155 541.00
IUUC-Ola-086697 Oryzias latipes 37.83 3.00e-80 291.00
IUUC-Oga-088697 Otolemur garnettii 37.97 1.00e-80 292.00
IUUC-Oar-089774 Ovis aries 37.97 2.00e-80 292.00
IUUC-Ptr-090924 Pan troglodytes 38.21 4.00e-81 294.00
IUUC-Pan-092373 Papio anubis 38.21 5.00e-81 294.00
IUUC-Psi-094001 Pelodiscus sinensis 37.50 2.00e-80 292.00
IUUC-Pma-094274 Petromyzon marinus 36.47 3.00e-74 271.00
IUUC-Ppa-095562 Physcomitrella patens 60.42 6.00e-155 539.00
IUUC-Pfo-097235 Poecilia formosa 37.59 2.00e-79 288.00
IUUC-Pab-098608 Pongo abelii 38.21 4.00e-81 294.00
IUUC-Pca-100268 Procavia capensis 37.50 2.00e-80 292.00
IUUC-Ppe-101425 Prunus persica 68.93 6.00e-177 612.00
IUUC-Pva-103183 Pteropus vampyrus 37.97 1.00e-80 292.00
IUUC-Rno-105097 Rattus norvegicus 37.74 2.00e-80 292.00
IUUC-Sha-107642 Sarcophilus harrisii 37.50 2.00e-80 292.00
IUUC-Smo-108680 Selaginella moellendorffii 57.65 2.00e-143 501.00
IUUC-Sit-110471 Setaria italica 62.94 2.00e-158 551.00
IUUC-Sly-111143 Solanum lycopersicum 65.16 4.00e-89 320.00
IUUC-Stu-111926 Solanum tuberosum 72.22 6.00e-72 261.00
IUUC-Sar-112947 Sorex araneus 44.35 1.00e-61 228.00
IUUC-Sbi-113769 Sorghum bicolor 61.92 2.00e-152 531.00
IUUC-Ssc-115736 Sus scrofa 37.97 1.00e-80 292.00
IUUC-Tgu-117457 Taeniopygia guttata 37.50 4.00e-81 294.00
IUUC-Tru-117760 Takifugu rubripes 37.59 3.00e-79 288.00
IUUC-Tsy-118943 Tarsius syrichta 37.26 2.00e-76 278.00
IUUC-Tni-120081 Tetraodon nigroviridis 37.12 9.00e-79 286.00
IUUC-Tca-121190 Theobroma cacao 71.86 0.00e+00 635.00
IUUC-Tae-123709 Triticum aestivum 61.94 1.00e-151 528.00
IUUC-Tur-126329 Triticum urartu 58.81 5.00e-140 490.00
IUUC-Tbe-127878 Tupaia belangeri 37.97 6.00e-80 290.00
IUUC-Ttr-128985 Tursiops truncatus 37.97 1.00e-80 292.00
IUUC-Vpa-130147 Vicugna pacos 37.97 2.00e-80 292.00
IUUC-Vvi-130935 Vitis vinifera 66.59 2.00e-176 611.00
IUUC-Xtr-132482 Xenopus tropicalis 37.26 9.00e-80 290.00
IUUC-Xma-133929 Xiphophorus maculatus 37.59 2.00e-79 288.00
Created Date 25-Jun-2017

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