iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006875

UUCD1 version

UUC-ArT-00598

Ensembl Protein ID

AT5G03200.1

UniProt Accession

Q9LYW5; Q8GZ27; Q8L8P7; LUL1_ARATH

Genbank Protein ID

BAB08380.1; CAB86087.1; AED90569.1; BAC41920.1; ABF85785.1; AAM67190.1

Protein Name

Probable E3 ubiquitin-protein ligase LUL1; Probable RING-type E3 ubiquitin transferase LUL1; Protein LOG2-LIKE UBIQUITIN LIGASE 1; RING finger protein 370

Genbank Nucleotide ID

AB005240; AL163002; CP002688; AK117244; BT025883; AY088884

Gene Name

LUL1; RF370; At5g03200; F15A17_230; MOK16.11

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G03200	AT5G03200.1	AT5G03200.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	23824688

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	9.90e-05	23.7	285	324

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgH.vfhadClqkwpglknssskefrCPlCr 46
           C +Cl++++d + vlpC H +++  C +++        ++ +CP+Cr
   Q: 285  CVVCLSEPRD-TTVLPCRHmCMCSGCAKAL------RFQTNLCPVCR 324
           ********99.888*****889*****999......99********8 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Acts as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates (in vitro).

Protein Sequence
(Fasta)

MGNLISLIFC CGRRQRSNIP PAMETAPLEL PPNRFVFAAV PPYLNPNPNY VDQYPGNCLP 60
PPVTEPPMLP YNFNHLHHYP PNSYQLPHPL FHGGRYPILP PPTYVHQKAV TIRNDVNLKK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAAGTTTAAT ACTAATTTAT AATATATACA AATAAACGTT TTGGTGTTTC TTCGTCGACG 60
TCGCTATCTC CAATCTCATT ACTCCCCTTT CTCAATGATC ATAAAACCTA CTTCGATTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0449--Lipoprotein
KW-0479--Metal-binding
KW-0519--Myristate
KW-1185--Reference proteome
KW-0808--Transferase
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001370--BIR_rpt
IPR001841--Znf_RING

PROSITE

PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding

KEGG

ath:AT5G03200

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Apl-004187	Anas platyrhynchos	34.66	1.00e-32	134.00
IUUC-Aca-005114	Anolis carolinensis	33.86	5.00e-33	135.00
IUUC-Aly-006409	Arabidopsis lyrata	85.33	5.00e-140	489.00
IUUC-Cin-025185	Ciona intestinalis	29.11	1.00e-24	106.00
IUUC-Fal-036855	Ficedula albicollis	34.75	4.00e-33	135.00
IUUC-Gga-040695	Gallus gallus	34.66	6.00e-33	134.00
IUUC-Mga-060123	Meleagris gallopavo	35.46	4.00e-33	135.00
IUUC-Mvi-060406	Microbotryum violaceum	41.67	6.00e-06	45.80
IUUC-Nfi-068357	Neosartorya fischeri	32.10	4.00e-06	45.10
IUUC-Psi-093844	Pelodiscus sinensis	35.06	5.00e-33	134.00
IUUC-Pca-100998	Procavia capensis	33.60	2.00e-28	119.00
IUUC-Pyt-104665	Pyrenophora triticirepentis	34.48	3.00e-04	38.90
IUUC-Tgu-116526	Taeniopygia guttata	34.75	5.00e-33	134.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence