iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006885

UUCD1 version

UUC-ArT-00172

Ensembl Protein ID

AT1G14260.3

UniProt Accession

Q4PS45; Q4PS45_ARATH

Genbank Protein ID

AAY63562.1; ABD19667.1; AEE29132.1; AEE29133.1; ANM60894.1

Protein Name

At1g14260; RING domain protein; RING/FYVE/PHD zinc finger superfamily protein

Genbank Nucleotide ID

DQ059090; BT024486; CP002684; CP002684; CP002684

Gene Name

At1g14260; F14L17.2; F14L17_2

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G14260	AT1G14260.3	AT1G14260.3

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein-protein Interaction
HINT
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	16339806

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	2.2	9.8	57	102

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHv....f.hadClqkwpglknssskefrCPlC 45
           C iC+++++   l  pC       + h++C+q+w    ++++++ +C +C
   Q: 57   CRICQDECDIKNLESPCACNgslkYaHRKCVQRW----CNEKGNTICEIC 102
           ******99444444776543455644********....99********** PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MSNHHTVVYV NGLVRPVLAE AEYSMRTESP ADNAIDIYDG DTTENEEEDS LISSAECRIC 60
QDECDIKNLE SPCACNGSLK YAHRKCVQRW CNEKGNTICE ICHQPYQAGY TSPPPPPQSE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTAGAGTTC ATATACTTGT GAATTTCTTG TTTTTCGTAT TTAGGGATTT GATTTCGTAG 60
AAGTGGTTTT GGGAAACACT GAGATGAGTA ATCATCACAC GGTCGTATAT GTTAATGGAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR022143--DUF3675
IPR033275--MARCH-like
IPR011016--Znf_RING-CH
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51292--ZF_RING_CH

Pfam

PF12428--DUF3675
PF12906--RINGv

SMART

SM00744--RINGv

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005700	Arabidopsis lyrata	82.59	9.00e-88	315.00
IUUC-Bol-015757	Brassica oleracea	75.29	3.00e-88	317.00
IUUC-Bra-016861	Brassica rapa	74.81	1.00e-92	331.00
IUUC-Fca-035463	Felis catus	33.33	2.00e-08	53.10
IUUC-Gga-040630	Gallus gallus	34.62	6.00e-09	54.30
IUUC-Gac-042616	Gasterosteus aculeatus	35.23	8.00e-10	57.40
IUUC-Loc-052274	Lepisosteus oculatus	32.46	2.00e-10	58.50
IUUC-Mmu-063140	Mus musculus	31.87	2.00e-09	56.20
IUUC-Ocu-074169	Oryctolagus cuniculus	33.33	1.00e-08	53.50
IUUC-Psi-093715	Pelodiscus sinensis	33.33	3.00e-08	52.00
IUUC-Pab-098715	Pongo abelii	28.07	6.00e-09	54.30
IUUC-Tgu-116933	Taeniopygia guttata	34.62	1.00e-08	53.90
IUUC-Tbe-128092	Tupaia belangeri	34.62	3.00e-10	58.50

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence