iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Xtr-132482

UUCD1 version

UUC-XeT-00962

Ensembl Protein ID

ENSXETP00000026283.3

UniProt Accession

Q6NVS0; Q6NVS0_XENTR

Genbank Protein ID

AAH67934.1; OCA18245.1

Protein Name

Cleavage stimulation factor, 3' pre-RNA, subunit 1

Genbank Nucleotide ID

AAMC01123677; KV460429

Gene Name

cstf1; XENTR_v90025910mg

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSXETG00000012030.3	ENSXETT00000026283.3	ENSXETP00000026283.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.30e-28	95.3	260	297
UBD/Beta-Prp	7.90e-73	245.4	102	429

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd..tllvsGsdDgtikvWDlrtgvll 36
           +Htd ++++++ ++  t+ v++s Dg+ik+WD  +++++
   Q: 260  QHTDAICSVNYnPSanTY-VTCSKDGSIKLWDGVSNRCI 297
           5***********555588.*************8888775 PP

UBD/Beta-Prp

   S: 4    tlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkl.......................lrslsgheaevtavkfspdgkilvt 69
           ++ ++hk+++++ ++s+d++l+atgs+d++ik+ d++++ +                       +r+l++h +evt++ f+p+++il++
   Q: 102  CYVTSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLAksampievmmnetaqqnmenhpvIRTLYDHVDEVTCLAFHPTEQILAS 190
           67889*********************************988************************************************ PP
   S: 70   gseDrtikvwdlstgkcvhtlk..ghedsvlslsfspsgdklvsGshdrtirvwdletgqclee..tlsghdgvvncvvvhpdgnllvs 154
           gs+D+t+k++d+s+++  +++k  ++ ++++s+sf+psgd++++G+++ t+r++d++t qc+ +  ++++h++++++v+++p++n +v+
   Q: 191  GSKDYTLKLFDYSKPSAKRAFKyiQEAEMLRSISFHPSGDFIIVGTQHPTLRLYDINTFQCFVScnPQDQHTDAICSVNYNPSANTYVT 279
           *****************99999999***************************************99*********************** PP
   S: 155  GslDrtvrlWdlktgkllrtltgghtdsvysls.fdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfs....pnderlv 238
           +s+D+ ++lWd  ++++++t +++h+++  + + f++n+k+++s ++d+  +lw+++tg+++++++g     ++v+ +    +++e +v
   Q: 280  CSKDGSIKLWDGVSNRCITTYEKAHDGAEVCSAiFSKNSKYILSSGKDSVARLWEISTGRMLVKYTGAGLSGRQVHRTqavfNHTEDYV 368
           *********************9999998777666***********************************99999988877789****** PP
   S: 239  sgssDgsiri..Wdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwklkkn 297
              ++++i++  Wd+r+ +  + l+l +++++ + v+s++++ ++++s+d ++++w  +++
   Q: 369  LLPDERTISLccWDSRTAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFRARFWYRRST 429
           ********9888********************************************98765 PP

Organism

Xenopus tropicalis

Protein Sequence
(Fasta)

MYRYKITLKD RQQLYKLIIS QMLYDGYINI ANGLISELKI HSVCAPSEQL LHLIKVGMEN 60
DDSAVQYAIG RSDTVAPGTG IDLEFDADVQ TMSPEASEYE TCYVTSHKGP CRVATYSRDG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCGCCTGTAT GACGTATAGT CGGGTCTGGG AGCGCTTTCT GGTTTGAAAG AGTTTTATCT 60
GGGCCTTTAC TGAGTATCTG TGCGCACTTA CCGGCATAGC CCCGCCCCGC CCCGGAAGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR032028--CSTF1_dimer
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF16699--CSTF1_dimer
PF00400--WD40

SMART

SM00320--WD40

KEGG

xtr:407896

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002163	Ailuropoda melanoleuca	95.36	0.00e+00	870.00
IUUC-Atr-002687	Amborella trichopoda	37.33	6.00e-67	248.00
IUUC-Apl-003438	Anas platyrhynchos	95.36	0.00e+00	870.00
IUUC-Aca-005178	Anolis carolinensis	95.36	0.00e+00	869.00
IUUC-Aly-005791	Arabidopsis lyrata	37.03	4.00e-79	288.00
IUUC-Ath-006689	Arabidopsis thaliana	37.26	2.00e-79	289.00
IUUC-Ame-011217	Astyanax mexicanus	91.20	7.00e-164	569.00
IUUC-Bta-012619	Bos taurus	95.59	0.00e+00	872.00
IUUC-Bdi-014515	Brachypodium distachyon	43.43	3.00e-79	288.00
IUUC-Bra-017450	Brassica rapa	35.49	5.00e-75	275.00
IUUC-Cel-018151	Caenorhabditis elegans	51.28	5.00e-132	464.00
IUUC-Cja-019304	Callithrix jacchus	95.13	0.00e+00	867.00
IUUC-Cfa-020208	Canis familiaris	95.36	0.00e+00	870.00
IUUC-Cpo-022245	Cavia porcellus	95.36	0.00e+00	870.00
IUUC-Csa-023066	Chlorocebus sabaeus	95.13	0.00e+00	867.00
IUUC-Cho-024770	Choloepus hoffmanni	97.33	0.00e+00	772.00
IUUC-Cin-025621	Ciona intestinalis	56.91	3.00e-149	521.00
IUUC-Csv-026071	Ciona savignyi	59.67	1.00e-160	558.00
IUUC-Dre-028254	Danio rerio	89.79	0.00e+00	832.00
IUUC-Dno-029903	Dasypus novemcinctus	95.36	0.00e+00	870.00
IUUC-Dor-030423	Dipodomys ordii	95.36	0.00e+00	870.00
IUUC-Dme-031993	Drosophila melanogaster	54.63	2.00e-131	462.00
IUUC-Ete-032689	Echinops telfairi	91.95	2.00e-78	285.00
IUUC-Eca-033316	Equus caballus	95.13	0.00e+00	869.00
IUUC-Eeu-035001	Erinaceus europaeus	91.42	0.00e+00	836.00
IUUC-Fca-036447	Felis catus	95.36	0.00e+00	870.00
IUUC-Fal-037601	Ficedula albicollis	95.36	0.00e+00	870.00
IUUC-Gmo-038531	Gadus morhua	87.53	0.00e+00	798.00
IUUC-Gga-040869	Gallus gallus	95.13	0.00e+00	868.00
IUUC-Gac-042380	Gasterosteus aculeatus	89.40	0.00e+00	824.00
IUUC-Gma-043478	Glycine max	38.33	4.00e-82	298.00
IUUC-Ggo-045302	Gorilla gorilla	95.13	0.00e+00	867.00
IUUC-Hsa-045678	Homo sapiens	95.13	0.00e+00	867.00
IUUC-Hvu-047301	Hordeum vulgare	43.62	6.00e-81	294.00
IUUC-Itr-048259	Ictidomys tridecemlineatus	95.36	0.00e+00	870.00
IUUC-Lch-050319	Latimeria chalumnae	93.74	0.00e+00	862.00
IUUC-Lpe-051440	Leersia perrieri	40.45	2.00e-66	246.00
IUUC-Loc-052035	Lepisosteus oculatus	90.95	0.00e+00	838.00
IUUC-Laf-054275	Loxodonta africana	95.36	0.00e+00	870.00
IUUC-Mcc-055857	Macaca mulatta	82.13	0.00e+00	717.00
IUUC-Meu-056194	Macropus eugenii	99.37	4.00e-92	330.00
IUUC-Mtr-058667	Medicago truncatula	37.85	8.00e-75	273.00
IUUC-Mga-059710	Meleagris gallopavo	95.13	0.00e+00	868.00
IUUC-Mmr-060604	Microcebus murinus	95.36	0.00e+00	870.00
IUUC-Mdo-062953	Monodelphis domestica	95.82	0.00e+00	875.00
IUUC-Mmu-064292	Mus musculus	95.13	0.00e+00	870.00
IUUC-Mac-064568	Musa acuminata	43.54	9.00e-78	283.00
IUUC-Mpu-066294	Mustela putorius furo	63.74	4.00e-153	534.00
IUUC-Mlu-067995	Myotis lucifugus	94.43	0.00e+00	861.00
IUUC-Nle-069322	Nomascus leucogenys	95.13	0.00e+00	867.00
IUUC-Opr-070580	Ochotona princeps	95.36	0.00e+00	870.00
IUUC-Ont-072554	Oreochromis niloticus	90.95	0.00e+00	840.00
IUUC-Oan-072856	Ornithorhynchus anatinus	95.36	0.00e+00	872.00
IUUC-Ocu-074150	Oryctolagus cuniculus	83.33	0.00e+00	730.00
IUUC-Oba-075585	Oryza barthii	38.59	3.00e-69	255.00
IUUC-Obr-076069	Oryza brachyantha	39.07	3.00e-75	275.00
IUUC-Ogl-077045	Oryza glaberrima	42.73	2.00e-79	289.00
IUUC-Ogu-078697	Oryza glumaepatula	39.74	3.00e-75	276.00
IUUC-Oin-080119	Oryza indica	42.73	2.00e-79	289.00
IUUC-Olo-081093	Oryza longistaminata	32.15	2.00e-44	175.00
IUUC-Ome-081718	Oryza meridionalis	35.00	2.00e-56	213.00
IUUC-Oni-082072	Oryza nivara	38.59	3.00e-69	255.00
IUUC-Opu-084080	Oryza punctata	35.29	3.00e-57	215.00
IUUC-Oru-085070	Oryza rufipogon	39.60	3.00e-69	256.00
IUUC-Osa-086149	Oryza sativa	42.73	2.00e-79	289.00
IUUC-Ola-086697	Oryzias latipes	90.49	0.00e+00	840.00
IUUC-Oga-088697	Otolemur garnettii	95.36	0.00e+00	870.00
IUUC-Oar-089774	Ovis aries	95.36	0.00e+00	872.00
IUUC-Ptr-090924	Pan troglodytes	95.13	0.00e+00	867.00
IUUC-Pan-092373	Papio anubis	95.13	0.00e+00	867.00
IUUC-Psi-094001	Pelodiscus sinensis	95.13	0.00e+00	868.00
IUUC-Pma-094274	Petromyzon marinus	74.19	0.00e+00	706.00
IUUC-Ppa-095562	Physcomitrella patens	36.41	8.00e-81	293.00
IUUC-Pfo-097235	Poecilia formosa	90.95	0.00e+00	840.00
IUUC-Pab-098608	Pongo abelii	95.13	0.00e+00	867.00
IUUC-Pca-100268	Procavia capensis	95.59	0.00e+00	872.00
IUUC-Ppe-101425	Prunus persica	41.31	3.00e-82	298.00
IUUC-Pva-103183	Pteropus vampyrus	95.36	0.00e+00	870.00
IUUC-Rno-105097	Rattus norvegicus	95.13	0.00e+00	870.00
IUUC-Sha-107642	Sarcophilus harrisii	95.82	0.00e+00	875.00
IUUC-Smo-108680	Selaginella moellendorffii	36.43	5.00e-77	281.00
IUUC-Sit-110471	Setaria italica	41.15	2.00e-82	300.00
IUUC-Sly-111143	Solanum lycopersicum	34.62	1.00e-32	132.00
IUUC-Stu-111926	Solanum tuberosum	43.48	1.00e-32	131.00
IUUC-Sar-112947	Sorex araneus	96.53	3.00e-169	587.00
IUUC-Sbi-113769	Sorghum bicolor	43.03	2.00e-79	289.00
IUUC-Ssc-115736	Sus scrofa	95.36	0.00e+00	870.00
IUUC-Tgu-117457	Taeniopygia guttata	95.36	0.00e+00	870.00
IUUC-Tru-117760	Takifugu rubripes	90.49	0.00e+00	839.00
IUUC-Tsy-118943	Tarsius syrichta	94.43	0.00e+00	856.00
IUUC-Tni-120081	Tetraodon nigroviridis	91.18	0.00e+00	842.00
IUUC-Tca-121190	Theobroma cacao	39.72	1.00e-84	306.00
IUUC-Tae-125535	Triticum aestivum	44.51	8.00e-84	303.00
IUUC-Tur-126329	Triticum urartu	44.51	2.00e-83	303.00
IUUC-Tbe-127878	Tupaia belangeri	93.87	0.00e+00	843.00
IUUC-Ttr-128985	Tursiops truncatus	95.36	0.00e+00	870.00
IUUC-Vpa-130147	Vicugna pacos	95.36	0.00e+00	871.00
IUUC-Vvi-130935	Vitis vinifera	42.58	3.00e-84	305.00
IUUC-Xma-133929	Xiphophorus maculatus	90.95	0.00e+00	840.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence