iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ocu-074438

Ensembl Protein ID

ENSOCUP00000018080.1

UniProt Accession

G1TM73; G1TM73_RABIT

Genbank Protein ID

ENSOCUP00000018080

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AAGW02049549

Gene Name

CHD3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSOCUG00000029299.1	ENSOCUT00000024566.1	ENSOCUP00000018080.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	2.30e-17	62.9	382	427

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           ++C vC++gge    l++C+ C + +H +Cl+++  ++ pn e w Cp+C+ 
   Q: 382  EYCRVCKDGGE----LLCCDACISSYHIHCLNPP-LPDIPNGE-WLCPRCTP 427
           59*********....*******************.*******8.******85 PP

Organism

Oryctolagus cuniculus

Protein Sequence
(Fasta)

LGVKKRKRGP KKQKENKPGK PRKRKKLDSE EEFGSERDEY REKSESGGSE YGTGPGRKRR 60
RKHREKKEKK TKRRKKGEGD GGQKQVEQKS SATLLLTWGL EDVEHVFSEE DYHTLTNYKA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTGGGTGTGA AGAAGAGAAA GCGAGGACCC AAGAAGCAGA AGGAGAATAA GCCGGGAAAA 60
CCCCGAAAAC GCAAAAAGCT TGTAAGTGTC AAGAATTCCT GCCTCTGGCG AGATGCAGGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR028722--CHD3
IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR009071--HMG_box_dom
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS50016--ZF_PHD_2

Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N

SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD

Gene Ontology

GO:0005813--C:centrosome
GO:0005737--C:cytoplasm
GO:0005730--C:nucleolus
GO:0016581--C:NuRD complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0003723--F:RNA binding
GO:0008270--F:zinc ion binding
GO:0051297--P:centrosome organization
GO:0006333--P:chromatin assembly or disassembly
GO:0006355--P:regulation of transcription, DNA-templated
GO:0007051--P:spindle organization

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aca-004560	Anolis carolinensis	78.60	0.00e+00	2586.00
IUUC-Aly-005645	Arabidopsis lyrata	39.62	1.00e-150	528.00
IUUC-Ath-007406	Arabidopsis thaliana	40.58	8.00e-156	545.00
IUUC-Ame-011352	Astyanax mexicanus	78.15	0.00e+00	2073.00
IUUC-Bta-012868	Bos taurus	92.84	0.00e+00	3070.00
IUUC-Bol-016073	Brassica oleracea	41.18	1.00e-155	545.00
IUUC-Bra-016724	Brassica rapa	41.41	1.00e-156	548.00
IUUC-Cja-019018	Callithrix jacchus	89.39	0.00e+00	2948.00
IUUC-Cfa-021055	Canis familiaris	92.06	0.00e+00	3034.00
IUUC-Cpo-021523	Cavia porcellus	92.37	0.00e+00	3101.00
IUUC-Csa-024136	Chlorocebus sabaeus	92.78	0.00e+00	3003.00
IUUC-Csv-025847	Ciona savignyi	54.62	0.00e+00	1428.00
IUUC-Dre-028043	Danio rerio	78.10	0.00e+00	2040.00
IUUC-Dor-030167	Dipodomys ordii	92.68	0.00e+00	2595.00
IUUC-Ete-032757	Echinops telfairi	86.36	0.00e+00	2730.00
IUUC-Eeu-034777	Erinaceus europaeus	85.75	0.00e+00	2605.00
IUUC-Fca-036043	Felis catus	91.70	0.00e+00	3056.00
IUUC-Gmo-038957	Gadus morhua	80.00	0.00e+00	1459.00
IUUC-Gac-041375	Gasterosteus aculeatus	68.29	0.00e+00	2427.00
IUUC-Gma-043999	Glycine max	43.12	0.00e+00	733.00
IUUC-Ggo-045538	Gorilla gorilla	93.29	0.00e+00	3005.00
IUUC-Hsa-045916	Homo sapiens	93.40	0.00e+00	3004.00
IUUC-Itr-048463	Ictidomys tridecemlineatus	92.84	0.00e+00	2962.00
IUUC-Lch-050343	Latimeria chalumnae	78.56	0.00e+00	2086.00
IUUC-Loc-052383	Lepisosteus oculatus	79.65	0.00e+00	2071.00
IUUC-Laf-053870	Loxodonta africana	92.41	0.00e+00	2695.00
IUUC-Mcc-055499	Macaca mulatta	86.90	0.00e+00	2883.00
IUUC-Meu-056292	Macropus eugenii	85.96	0.00e+00	1252.00
IUUC-Mmr-061223	Microcebus murinus	91.65	0.00e+00	3001.00
IUUC-Mdo-062971	Monodelphis domestica	86.79	0.00e+00	2694.00
IUUC-Mmu-063920	Mus musculus	91.04	0.00e+00	2954.00
IUUC-Mpu-065809	Mustela putorius furo	92.54	0.00e+00	2798.00
IUUC-Mlu-067355	Myotis lucifugus	91.95	0.00e+00	3091.00
IUUC-Nle-069842	Nomascus leucogenys	92.26	0.00e+00	2881.00
IUUC-Opr-070960	Ochotona princeps	90.38	0.00e+00	2945.00
IUUC-Ont-072647	Oreochromis niloticus	65.42	0.00e+00	2226.00
IUUC-Oan-072885	Ornithorhynchus anatinus	59.05	0.00e+00	1824.00
IUUC-Ola-086961	Oryzias latipes	66.59	0.00e+00	2042.00
IUUC-Oga-088374	Otolemur garnettii	91.59	0.00e+00	3017.00
IUUC-Oar-089784	Ovis aries	92.33	0.00e+00	3060.00
IUUC-Ptr-090799	Pan troglodytes	93.45	0.00e+00	3014.00
IUUC-Pan-092282	Papio anubis	74.86	0.00e+00	1992.00
IUUC-Pfo-096265	Poecilia formosa	74.46	0.00e+00	2079.00
IUUC-Pab-098174	Pongo abelii	90.35	0.00e+00	2882.00
IUUC-Pca-100829	Procavia capensis	91.29	0.00e+00	2204.00
IUUC-Rno-104884	Rattus norvegicus	89.86	0.00e+00	2827.00
IUUC-Sha-107233	Sarcophilus harrisii	87.98	0.00e+00	2877.00
IUUC-Smo-108946	Selaginella moellendorffii	36.12	6.00e-160	559.00
IUUC-Sly-110976	Solanum lycopersicum	43.64	0.00e+00	732.00
IUUC-Ssc-115751	Sus scrofa	92.78	0.00e+00	3021.00
IUUC-Tru-118648	Takifugu rubripes	75.27	0.00e+00	2135.00
IUUC-Tni-120039	Tetraodon nigroviridis	75.40	0.00e+00	2098.00
IUUC-Tbe-128117	Tupaia belangeri	90.04	0.00e+00	1321.00
IUUC-Ttr-128301	Tursiops truncatus	66.40	0.00e+00	2202.00
IUUC-Vpa-130209	Vicugna pacos	78.60	0.00e+00	630.00
IUUC-Vvi-130849	Vitis vinifera	43.64	0.00e+00	730.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence