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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-007219
UUCD1 version UUC-ArT-00664
Ensembl Protein ID AT1G73720.1
UniProt Accession Q8W117; Q9C9T9; SMU1_ARATH
Genbank Protein ID AAG52064.1; AEE35501.1; AAL58892.1; AAM26696.1
Protein Name Suppressor of mec-8 and unc-52 protein homolog 1; RNA splicing protein SMU1; WD40 repeat-containing protein SMU1
Genbank Nucleotide ID AC012679; CP002684; AF462796; AY102129
Gene Name SMU1; At1g73720; F25P22.14
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT1G73720 AT1G73720.1 AT1G73720.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
Protein-protein Interaction
iRefIndexPINAHINTMentha
Post-translational Modifications (PTMs)
UniProt
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.30e-33 113.6 262 299
UBD/Beta-Prp 1.60e-53 182.7 211 510
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           H d+v c++f  d  +l+sGs Dg+ik+W++rtgv+++
   Q: 262  HDDPVLCIDFsRDsEMLASGSQDGKIKIWRIRTGVCIR 299
           99*********777**********************86 PP
   

   UBD/Beta-Prp
   S: 8    hhksvitcvkfspdksllatgsrdgtikvwdvttgkl........lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsv 97
            +ks   c  fspd+++la++s dg i+vwd+ +gkl         +s+  h+++v +++fs+d+++l++gs+D+ ik+w ++tg c++ + +h++ v
   Q: 211  GKKSHAECARFSPDGQFLASSSVDGFIEVWDYISGKLkkdlqyqaDESFMMHDDPVLCIDFSRDSEMLASGSQDGKIKIWRIRTGVCIRRFDAHSQGV 308
           5678899******************************888888877888889999******************************************* PP
   S: 98   lslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtl......tgghtdsvysls.f 188
           +slsfs++g+ l+s+s d+t+r+  l++g+ l+  ++gh++ vn++ + +dg+ ++++s D tv++Wd+kt ++l+t+      +g  + sv+s+  f
   Q: 309  TSLSFSRDGSQLLSTSFDQTARIHGLKSGKLLK-EFRGHTSYVNHAIFTSDGSRIITASSDCTVKVWDSKTTDCLQTFkpppplRG-TDASVNSIHlF 404
           *********************************.*************************************************777.*********99 PP
   S: 189  dsngkelvsgsldgtvklwdlqtgecvrtlng.htdnvksvrfs..pnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlg 283
            +n +++v + + +++ +  lq g++v+++    ++    v+++   +++++++ ++D+ +++++++sg l + +  h++ vi +++ ++ +n l++ 
   Q: 405  PKNTEHIVVCNKTSSIYIMTLQ-GQVVKSFSSgNREGGDFVAACvsTKGDWIYCIGEDKKLYCFNYQSGGLEHFMMVHEKDVIGITH-HPHRNLLATY 500
           99*******************6.6677777651555555555545578***************************************.********** PP
   S: 284  sedskvniwk 293
           sed++ ++wk
   Q: 501  SEDCTMKLWK 510
           *********8 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Auxiliary spliceosomal protein involved in splicing of specific pre-mRNAs that affect multiple aspects of development. Required for proper accumulation of SMU2.
 Auxiliary spliceosomal protein involved in splicing of specific pre-mRNAs that affect multiple aspects of development. Required for proper accumulation of SMU2.
Protein Sequence
(Fasta)
MALEIEARDV IKIMLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFISD INSGRWDSVL 60
PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT QVMGVMKQEQ AERYLRMEHL 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-007219|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CTTCGCGTGT GTTTTCTGCT GCATTTTTAC CTCTTAGCGT CTCCGGCGAA AACCCACTAC 60
GACTGAGTAT GGCGCTCGAA ATCGAAGCTC GAGAGTAAGA TTTCGCTTTC TCTTACAAAC 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-007219|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0007--Acetylation
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat
Interpro

IPR006595--CTLH_C
IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40
Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005634--C:nucleus
GO:0008380--P:RNA splicing
KEGG ath:AT1G73720
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000857 Aegilops tauschii 86.11 6.00e-73 265.00
IUUC-Aml-001330 Ailuropoda melanoleuca 64.72 0.00e+00 715.00
IUUC-Atr-002570 Amborella trichopoda 85.13 0.00e+00 930.00
IUUC-Apl-003826 Anas platyrhynchos 65.18 0.00e+00 686.00
IUUC-Aca-005183 Anolis carolinensis 64.47 0.00e+00 709.00
IUUC-Aly-005632 Arabidopsis lyrata 97.85 0.00e+00 1049.00
IUUC-Ame-011374 Astyanax mexicanus 63.94 0.00e+00 709.00
IUUC-Bta-012890 Bos taurus 64.72 0.00e+00 715.00
IUUC-Bdi-014061 Brachypodium distachyon 82.39 0.00e+00 917.00
IUUC-Bol-016332 Brassica oleracea 91.98 0.00e+00 1003.00
IUUC-Bra-017612 Brassica rapa 91.80 0.00e+00 1004.00
IUUC-Cel-018238 Caenorhabditis elegans 50.59 4.00e-161 560.00
IUUC-Cja-019336 Callithrix jacchus 64.72 0.00e+00 715.00
IUUC-Cfa-021108 Canis familiaris 64.91 0.00e+00 716.00
IUUC-Cpo-022052 Cavia porcellus 64.72 0.00e+00 715.00
IUUC-Cre-022595 Chlamydomonas reinhardtii 64.26 0.00e+00 713.00
IUUC-Csa-023488 Chlorocebus sabaeus 64.72 0.00e+00 715.00
IUUC-Cho-025010 Choloepus hoffmanni 57.12 4.00e-176 610.00
IUUC-Cin-025251 Ciona intestinalis 62.26 0.00e+00 689.00
IUUC-Csv-026092 Ciona savignyi 58.32 0.00e+00 625.00
IUUC-Dre-027382 Danio rerio 63.55 0.00e+00 704.00
IUUC-Dno-029007 Dasypus novemcinctus 64.91 0.00e+00 715.00
IUUC-Dor-030180 Dipodomys ordii 56.05 4.00e-126 443.00
IUUC-Dme-031762 Drosophila melanogaster 60.04 0.00e+00 673.00
IUUC-Ete-032933 Echinops telfairi 64.19 5.00e-170 589.00
IUUC-Eca-033864 Equus caballus 64.88 0.00e+00 703.00
IUUC-Eeu-034635 Erinaceus europaeus 59.14 5.00e-148 516.00
IUUC-Fca-036119 Felis catus 64.72 0.00e+00 715.00
IUUC-Fal-037396 Ficedula albicollis 65.33 0.00e+00 698.00
IUUC-Gmo-038962 Gadus morhua 63.35 0.00e+00 698.00
IUUC-Gga-040134 Gallus gallus 64.91 0.00e+00 715.00
IUUC-Gac-041630 Gasterosteus aculeatus 63.35 0.00e+00 704.00
IUUC-Gma-043928 Glycine max 87.25 0.00e+00 956.00
IUUC-Ggo-045061 Gorilla gorilla 64.66 0.00e+00 710.00
IUUC-Hsa-046215 Homo sapiens 64.72 0.00e+00 715.00
IUUC-Hvu-047799 Hordeum vulgare 81.94 0.00e+00 638.00
IUUC-Itr-048826 Ictidomys tridecemlineatus 64.72 0.00e+00 715.00
IUUC-Lch-050209 Latimeria chalumnae 60.31 0.00e+00 650.00
IUUC-Lpe-050740 Leersia perrieri 83.33 0.00e+00 923.00
IUUC-Loc-052739 Lepisosteus oculatus 59.92 0.00e+00 654.00
IUUC-Laf-053895 Loxodonta africana 64.59 0.00e+00 710.00
IUUC-Mcc-055183 Macaca mulatta 64.72 0.00e+00 715.00
IUUC-Mtr-057730 Medicago truncatula 84.74 0.00e+00 917.00
IUUC-Mga-059222 Meleagris gallopavo 66.03 7.00e-171 592.00
IUUC-Mmr-061749 Microcebus murinus 64.88 0.00e+00 704.00
IUUC-Mdo-062920 Monodelphis domestica 64.52 0.00e+00 713.00
IUUC-Mmu-063228 Mus musculus 64.72 0.00e+00 715.00
IUUC-Mac-065084 Musa acuminata 84.31 0.00e+00 931.00
IUUC-Mpu-066162 Mustela putorius furo 64.72 0.00e+00 715.00
IUUC-Mlu-067471 Myotis lucifugus 63.94 0.00e+00 709.00
IUUC-Nle-070129 Nomascus leucogenys 64.72 0.00e+00 715.00
IUUC-Opr-071176 Ochotona princeps 64.88 0.00e+00 703.00
IUUC-Ont-071830 Oreochromis niloticus 63.74 0.00e+00 710.00
IUUC-Oan-072778 Ornithorhynchus anatinus 64.91 0.00e+00 715.00
IUUC-Ocu-074570 Oryctolagus cuniculus 64.72 0.00e+00 715.00
IUUC-Oba-075507 Oryza barthii 82.94 0.00e+00 924.00
IUUC-Obr-076672 Oryza brachyantha 83.92 0.00e+00 933.00
IUUC-Ogl-077110 Oryza glaberrima 82.94 0.00e+00 924.00
IUUC-Ogu-077976 Oryza glumaepatula 82.94 0.00e+00 924.00
IUUC-Oin-079525 Oryza indica 82.94 0.00e+00 924.00
IUUC-Olo-080391 Oryza longistaminata 80.57 0.00e+00 913.00
IUUC-Oni-082778 Oryza nivara 82.94 0.00e+00 924.00
IUUC-Opu-083710 Oryza punctata 83.17 0.00e+00 926.00
IUUC-Oru-084250 Oryza rufipogon 82.94 0.00e+00 924.00
IUUC-Osa-085363 Oryza sativa 82.94 0.00e+00 924.00
IUUC-Ola-087092 Oryzias latipes 63.55 0.00e+00 706.00
IUUC-Olu-087753 Ostreococcus lucimarinus 52.82 1.00e-147 515.00
IUUC-Oga-088278 Otolemur garnettii 60.39 0.00e+00 638.00
IUUC-Oar-089664 Ovis aries 64.34 0.00e+00 710.00
IUUC-Ptr-090991 Pan troglodytes 64.72 0.00e+00 715.00
IUUC-Pan-092697 Papio anubis 64.72 0.00e+00 715.00
IUUC-Psi-093204 Pelodiscus sinensis 65.13 0.00e+00 697.00
IUUC-Ppa-095325 Physcomitrella patens 80.39 0.00e+00 887.00
IUUC-Pfo-096988 Poecilia formosa 63.74 0.00e+00 708.00
IUUC-Pab-098288 Pongo abelii 64.72 0.00e+00 715.00
IUUC-Pop-098787 Populus trichocarpa 85.35 0.00e+00 948.00
IUUC-Pca-100583 Procavia capensis 60.32 0.00e+00 634.00
IUUC-Ppe-101307 Prunus persica 85.69 0.00e+00 941.00
IUUC-Pva-102711 Pteropus vampyrus 64.72 0.00e+00 715.00
IUUC-Rno-105614 Rattus norvegicus 64.72 0.00e+00 715.00
IUUC-Sha-107017 Sarcophilus harrisii 64.72 0.00e+00 715.00
IUUC-Smo-108800 Selaginella moellendorffii 76.76 0.00e+00 820.00
IUUC-Sit-110278 Setaria italica 83.92 0.00e+00 906.00
IUUC-Sly-111777 Solanum lycopersicum 85.29 0.00e+00 934.00
IUUC-Stu-112293 Solanum tuberosum 85.29 0.00e+00 934.00
IUUC-Sar-112955 Sorex araneus 58.17 1.00e-178 618.00
IUUC-Sbi-114802 Sorghum bicolor 83.73 0.00e+00 902.00
IUUC-Ssc-116054 Sus scrofa 64.72 0.00e+00 715.00
IUUC-Tgu-116909 Taeniopygia guttata 64.26 0.00e+00 706.00
IUUC-Tru-118195 Takifugu rubripes 64.52 0.00e+00 716.00
IUUC-Tsy-119420 Tarsius syrichta 59.26 0.00e+00 631.00
IUUC-Tni-120416 Tetraodon nigroviridis 64.33 0.00e+00 710.00
IUUC-Tca-121653 Theobroma cacao 86.91 0.00e+00 939.00
IUUC-Tae-125609 Triticum aestivum 82.55 0.00e+00 916.00
IUUC-Tur-126197 Triticum urartu 80.87 0.00e+00 654.00
IUUC-Tbe-128009 Tupaia belangeri 65.68 3.00e-135 474.00
IUUC-Ttr-128719 Tursiops truncatus 58.09 0.00e+00 630.00
IUUC-Vpa-130579 Vicugna pacos 64.33 0.00e+00 707.00
IUUC-Vvi-131127 Vitis vinifera 86.47 0.00e+00 946.00
IUUC-Xtr-132950 Xenopus tropicalis 60.35 0.00e+00 653.00
IUUC-Xma-133537 Xiphophorus maculatus 63.74 0.00e+00 708.00
Created Date 25-Jun-2017

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