iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099295

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000337

Gene Name

POPTRDRAFT_751000; POPTR_0001s12800g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0001s12800	POPTR_0001s12800.1	POPTR_0001s12800.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.20e-20	74.4	259	325

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 4    eeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawce 70
             f+Cp+ +e+M+dPv + +G++++r++I+ ++++g++ cP+++++l++ +l+Pn  lr+ i++w  
   Q: 259  NSFICPLCNEMMTDPVAIFCGHSFERKAIQDCFNRGERNCPTCGEELQSLELTPNVNLRSSIDEWKL 325
           57***************************************************************76 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MDFNNGIEDV GVAVLQELWN KVAFQAMEIV TETRDVVLEK DSLQEFSRSI LELSTLLRAL 60
DAKRVESAMG LESTKAALET LNSQLREAAK IIKGYKSGSC LRLLLHSHSI RLQMQNLSKE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGATTTCA ATAATGGAAT TGAGGATGTA GGGGTGGCAG TACTGCAGGA ATTGTGGAAC 60
AAGGTGGCAT TTCAAGCAAT GGAGATCGTT ACCGAAACAA GGGATGTGGT TCTTGAAAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX
PS50089--ZF_RING_2

Pfam

PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding

KEGG

pop:POPTR_0001s12800g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Dre-028287	Danio rerio	37.14	1.00e-08	53.90
IUUC-Lch-049577	Latimeria chalumnae	35.48	7.00e-09	54.70
IUUC-Mac-064728	Musa acuminata	41.60	0.00e+00	657.00
IUUC-Pfo-096047	Poecilia formosa	39.34	3.00e-08	52.00
IUUC-Ppe-101916	Prunus persica	66.00	0.00e+00	1205.00
IUUC-Tru-118470	Takifugu rubripes	33.87	3.00e-09	56.20
IUUC-Tni-119680	Tetraodon nigroviridis	35.71	8.00e-09	54.30
IUUC-Tca-121550	Theobroma cacao	69.14	0.00e+00	1270.00
IUUC-Tme-126988	Tuber melanosporum	42.55	6.00e-05	41.20
IUUC-Ttr-128578	Tursiops truncatus	39.13	2.00e-09	56.60

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence