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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Rno-106101
UUCD1 version UUC-RaN-00684
Ensembl Protein ID ENSRNOP00000001196.3
UniProt Accession G3V631; G3V631_RAT
Genbank Protein ID EDM13464.1
Protein Name RAB guanine nucleotide exchange factor (GEF) 1 (Predicted), isoform CRA_a; RAB guanine nucleotide exchange factor 1
Genbank Nucleotide ID AC116246
Gene Name Rabgef1; Rabgef1_predicted; rCG_21279
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000000895.4 ENSRNOT00000001196.4 ENSRNOP00000001196.3
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFACRAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
dbPAFPhosphositePlus
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
UBD/ZnF/ZnF_A20 1.20e-18 67.1 24 58
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   UBD/ZnF/ZnF_A20
   S: 1    dpskllCkkgCgfYGnpetngyCSkCyreelrrrr 35
           d+s+llCkkgCg+YGnp+++g+CSkC+ree++++r
   Q: 24   DQSELLCKKGCGYYGNPAWQGFCSKCWREEYHKAR 58
           79*******************************86 PP
   
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MLSHSLVIRK KMSLKSERRG IHVDQSELLC KKGCGYYGNP AWQGFCSKCW REEYHKARQR 60
QIQEDWELAE RLQREEEEAF ASSQSSQGAQ SLTFSKFEEK KTNEKTRKVT TVKKFFSASS 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-106101|UBD,ZnF_A20|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GCTCTGTGTA TTTCGGGCCT CAGATGAAGT CTTTCTTTAC TGTGGCTGTA CTTGAATTCG 60
CCGTGTTGAA CTTTGGCGTT TGTACTTTCT TCTCTCCTTC TGTTCTTTCT TTCTCCCCTT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-106101|UBD,ZnF_A20|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
Interpro

IPR003123--VPS9
IPR002653--Znf_A20
PROSITE

PS51205--VPS9
PS51036--ZF_A20
Pfam

PF02204--VPS9
PF01754--zf-A20
SMART

SM00167--VPS9
SM00259--ZnF_A20
Gene Ontology

GO:0005829--C:cytosol
GO:0005769--C:early endosome
GO:0005730--C:nucleolus
GO:0003677--F:DNA binding
GO:0017112--F:Rab guanyl-nucleotide exchange factor activity
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0050728--P:negative regulation of inflammatory response
GO:1900165--P:negative regulation of interleukin-6 secretion
GO:1900235--P:negative regulation of Kit signaling pathway
GO:0002686--P:negative regulation of leukocyte migration
GO:0043305--P:negative regulation of mast cell degranulation
GO:0001933--P:negative regulation of protein phosphorylation
GO:0046580--P:negative regulation of Ras protein signal transduction
GO:0048261--P:negative regulation of receptor-mediated endocytosis
GO:0006612--P:protein targeting to membrane
GO:0060368--P:regulation of Fc receptor mediated stimulatory signaling pathway
KEGG rno:360797
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000198 Aegilops tauschii 31.51 1.00e-19 91.70
IUUC-Aml-001771 Ailuropoda melanoleuca 85.85 0.00e+00 736.00
IUUC-Atr-003154 Amborella trichopoda 35.96 8.00e-22 98.20
IUUC-Apl-004018 Anas platyrhynchos 91.26 0.00e+00 845.00
IUUC-Aca-005227 Anolis carolinensis 23.98 2.00e-09 57.80
IUUC-Aly-006138 Arabidopsis lyrata 34.92 5.00e-24 105.00
IUUC-Ath-006929 Arabidopsis thaliana 31.82 2.00e-25 110.00
IUUC-Ago-007776 Ashbya gossypii 30.00 9.00e-24 104.00
IUUC-Acl-008235 Aspergillus clavatus 30.77 8.00e-28 119.00
IUUC-Afl-008570 Aspergillus flavus 32.12 4.00e-31 130.00
IUUC-Afu-008815 Aspergillus fumigatus 29.67 9.00e-29 122.00
IUUC-Ani-009381 Aspergillus nidulans 30.04 1.00e-28 121.00
IUUC-Ang-009615 Aspergillus niger 30.48 1.00e-30 127.00
IUUC-Aor-010195 Aspergillus oryzae 32.12 9.00e-32 131.00
IUUC-Ate-010514 Aspergillus terreus 31.21 2.00e-29 124.00
IUUC-Ame-011365 Astyanax mexicanus 66.53 0.00e+00 671.00
IUUC-Bgr-012102 Blumeria graminis 28.43 5.00e-29 123.00
IUUC-Bta-013124 Bos taurus 95.93 0.00e+00 876.00
IUUC-Bci-013943 Botrytis cinerea 30.14 3.00e-29 123.00
IUUC-Bdi-014539 Brachypodium distachyon 31.42 1.00e-25 110.00
IUUC-Bol-016580 Brassica oleracea 34.40 4.00e-29 122.00
IUUC-Bra-017843 Brassica rapa 33.94 8.00e-29 121.00
IUUC-Cel-018199 Caenorhabditis elegans 33.85 1.00e-59 223.00
IUUC-Cja-019941 Callithrix jacchus 94.99 0.00e+00 882.00
IUUC-Cfa-020845 Canis familiaris 96.09 0.00e+00 802.00
IUUC-Cpo-022037 Cavia porcellus 95.52 0.00e+00 868.00
IUUC-Cre-022696 Chlamydomonas reinhardtii 31.82 9.00e-21 94.70
IUUC-Csa-023495 Chlorocebus sabaeus 94.75 0.00e+00 867.00
IUUC-Cho-025076 Choloepus hoffmanni 84.32 0.00e+00 732.00
IUUC-Cin-025400 Ciona intestinalis 44.66 4.00e-116 411.00
IUUC-Csv-025941 Ciona savignyi 38.18 6.00e-87 314.00
IUUC-Cgl-026725 Colletotrichum gloeosporioides 29.08 2.00e-26 114.00
IUUC-Cne-027057 Cryptococcus neoformans 31.76 4.00e-34 139.00
IUUC-Dre-028484 Danio rerio 71.29 0.00e+00 675.00
IUUC-Dno-028906 Dasypus novemcinctus 95.33 0.00e+00 860.00
IUUC-Dor-030124 Dipodomys ordii 85.92 0.00e+00 752.00
IUUC-Dse-031437 Dothistroma septosporum 28.32 6.00e-25 109.00
IUUC-Dme-031696 Drosophila melanogaster 32.71 3.00e-69 256.00
IUUC-Ete-032573 Echinops telfairi 91.20 0.00e+00 712.00
IUUC-Eca-033711 Equus caballus 96.33 0.00e+00 881.00
IUUC-Eeu-034459 Erinaceus europaeus 69.90 2.00e-75 276.00
IUUC-Fca-035447 Felis catus 93.48 0.00e+00 887.00
IUUC-Fal-036605 Ficedula albicollis 87.89 0.00e+00 781.00
IUUC-Fox-037967 Fusarium oxysporum 26.71 1.00e-17 85.50
IUUC-Fso-038110 Fusarium solani 29.63 2.00e-28 121.00
IUUC-Gmo-038785 Gadus morhua 66.60 0.00e+00 676.00
IUUC-Ggr-039760 Gaeumannomyces graminis 39.35 6.00e-27 116.00
IUUC-Gga-040584 Gallus gallus 91.67 0.00e+00 845.00
IUUC-Gac-042469 Gasterosteus aculeatus 64.59 1.00e-168 586.00
IUUC-Gma-044237 Glycine max 36.87 3.00e-25 109.00
IUUC-Ggo-044498 Gorilla gorilla 82.52 0.00e+00 727.00
IUUC-Hsa-046625 Homo sapiens 94.79 0.00e+00 881.00
IUUC-Hvu-047155 Hordeum vulgare 37.22 1.00e-25 110.00
IUUC-Itr-048753 Ictidomys tridecemlineatus 95.32 0.00e+00 868.00
IUUC-Kpa-049160 Komagataella pastoris 29.73 4.00e-24 106.00
IUUC-Lch-050529 Latimeria chalumnae 78.13 0.00e+00 846.00
IUUC-Lpe-051024 Leersia perrieri 31.17 3.00e-28 119.00
IUUC-Loc-052644 Lepisosteus oculatus 70.02 0.00e+00 665.00
IUUC-Lma-053102 Leptosphaeria maculans 30.38 8.00e-27 115.00
IUUC-Laf-054337 Loxodonta africana 93.89 0.00e+00 862.00
IUUC-Mcc-055659 Macaca mulatta 93.94 5.00e-174 603.00
IUUC-Meu-056084 Macropus eugenii 76.02 1.00e-94 340.00
IUUC-Mor-057255 Magnaporthe oryzae 29.60 4.00e-26 113.00
IUUC-Mpo-057454 Magnaporthe poae 30.69 2.00e-28 120.00
IUUC-Mtr-058098 Medicago truncatula 34.09 1.00e-29 124.00
IUUC-Mla-059068 Melampsora laricipopulina 32.00 4.00e-30 125.00
IUUC-Mga-059624 Meleagris gallopavo 78.28 0.00e+00 840.00
IUUC-Mvi-060282 Microbotryum violaceum 27.91 8.00e-25 109.00
IUUC-Mmr-061142 Microcebus murinus 95.40 0.00e+00 889.00
IUUC-Mdo-062289 Monodelphis domestica 93.08 0.00e+00 902.00
IUUC-Mmu-063961 Mus musculus 99.19 0.00e+00 900.00
IUUC-Mac-065188 Musa acuminata 33.33 3.00e-22 99.40
IUUC-Mpu-066291 Mustela putorius furo 94.27 0.00e+00 880.00
IUUC-Mlu-067431 Myotis lucifugus 90.96 0.00e+00 834.00
IUUC-Nfi-068422 Neosartorya fischeri 30.79 7.00e-30 125.00
IUUC-Ncr-068843 Neurospora crassa 28.03 4.00e-28 120.00
IUUC-Nle-069079 Nomascus leucogenys 95.11 0.00e+00 869.00
IUUC-Opr-070790 Ochotona princeps 95.37 1.00e-57 218.00
IUUC-Ont-071789 Oreochromis niloticus 68.13 2.00e-177 615.00
IUUC-Oan-072946 Ornithorhynchus anatinus 89.45 0.00e+00 810.00
IUUC-Ocu-073816 Oryctolagus cuniculus 96.15 0.00e+00 875.00
IUUC-Oba-075738 Oryza barthii 29.46 7.00e-17 81.60
IUUC-Obr-076355 Oryza brachyantha 37.36 2.00e-26 113.00
IUUC-Ogl-077592 Oryza glaberrima 27.30 7.00e-27 114.00
IUUC-Ogu-078197 Oryza glumaepatula 28.35 1.00e-26 114.00
IUUC-Oin-080047 Oryza indica 33.04 6.00e-25 108.00
IUUC-Olo-080317 Oryza longistaminata 28.35 1.00e-26 113.00
IUUC-Ome-081589 Oryza meridionalis 33.04 2.00e-25 110.00
IUUC-Oni-082700 Oryza nivara 29.73 7.00e-17 81.60
IUUC-Opu-083923 Oryza punctata 32.61 3.00e-21 95.50
IUUC-Oru-084318 Oryza rufipogon 29.73 7.00e-17 81.60
IUUC-Osa-086246 Oryza sativa 38.98 2.00e-06 43.90
IUUC-Ola-086730 Oryzias latipes 57.83 7.00e-152 530.00
IUUC-Olu-087719 Ostreococcus lucimarinus 33.52 7.00e-23 101.00
IUUC-Oga-088992 Otolemur garnettii 83.54 0.00e+00 880.00
IUUC-Oar-089789 Ovis aries 94.83 0.00e+00 878.00
IUUC-Ptr-091636 Pan troglodytes 95.32 0.00e+00 871.00
IUUC-Pan-092911 Papio anubis 94.02 0.00e+00 874.00
IUUC-Psi-093194 Pelodiscus sinensis 78.20 0.00e+00 830.00
IUUC-Pma-094212 Petromyzon marinus 49.50 3.00e-116 412.00
IUUC-Pno-094831 Phaeosphaeria nodorum 29.89 1.00e-26 115.00
IUUC-Ppa-095705 Physcomitrella patens 30.50 2.00e-28 120.00
IUUC-Pfo-096694 Poecilia formosa 64.43 2.00e-178 619.00
IUUC-Pab-097706 Pongo abelii 95.14 0.00e+00 874.00
IUUC-Pop-099891 Populus trichocarpa 31.84 7.00e-25 108.00
IUUC-Pca-100879 Procavia capensis 91.55 4.00e-89 321.00
IUUC-Ppe-101334 Prunus persica 31.47 1.00e-25 111.00
IUUC-Pva-103225 Pteropus vampyrus 80.81 0.00e+00 704.00
IUUC-Pgr-103564 Puccinia graminis 30.00 1.00e-30 128.00
IUUC-Ptt-103802 Puccinia triticina 45.61 1.00e-24 107.00
IUUC-Pte-104345 Pyrenophora teres 29.19 7.00e-27 115.00
IUUC-Pyt-104716 Pyrenophora triticirepentis 29.48 8.00e-28 119.00
IUUC-Sce-106460 Saccharomyces cerevisiae 30.04 6.00e-25 108.00
IUUC-Sha-106919 Sarcophilus harrisii 78.15 0.00e+00 846.00
IUUC-Sja-107880 Schizosaccharomyces japonicus 31.97 5.00e-30 125.00
IUUC-Spo-108087 Schizosaccharomyces pombe 30.23 2.00e-27 117.00
IUUC-Ssl-108614 Sclerotinia sclerotiorum 29.82 2.00e-07 51.20
IUUC-Smo-109411 Selaginella moellendorffii 36.57 1.00e-27 117.00
IUUC-Sit-110678 Setaria italica 31.77 9.00e-26 111.00
IUUC-Sly-111526 Solanum lycopersicum 37.29 1.00e-24 107.00
IUUC-Stu-112494 Solanum tuberosum 37.85 3.00e-25 109.00
IUUC-Sar-112929 Sorex araneus 97.45 4.00e-162 565.00
IUUC-Sbi-114242 Sorghum bicolor 32.55 9.00e-28 118.00
IUUC-Sre-115224 Sporisorium reilianum 30.60 6.00e-29 123.00
IUUC-Ssc-115239 Sus scrofa 95.93 0.00e+00 872.00
IUUC-Tgu-117499 Taeniopygia guttata 89.61 0.00e+00 825.00
IUUC-Tru-118450 Takifugu rubripes 59.59 2.00e-169 588.00
IUUC-Tsy-119462 Tarsius syrichta 95.17 0.00e+00 850.00
IUUC-Tni-120855 Tetraodon nigroviridis 64.14 4.00e-173 601.00
IUUC-Tca-121213 Theobroma cacao 32.57 3.00e-24 106.00
IUUC-Tre-122186 Trichoderma reesei 29.22 2.00e-28 120.00
IUUC-Tvi-122541 Trichoderma virens 27.68 5.00e-28 119.00
IUUC-Tae-123631 Triticum aestivum 34.51 1.00e-26 114.00
IUUC-Tur-126572 Triticum urartu 38.33 1.00e-25 111.00
IUUC-Tme-127023 Tuber melanosporum 32.93 3.00e-31 130.00
IUUC-Tbe-127453 Tupaia belangeri 95.84 0.00e+00 771.00
IUUC-Ttr-128526 Tursiops truncatus 95.52 0.00e+00 872.00
IUUC-Uma-129660 Ustilago maydis 31.54 3.00e-29 124.00
IUUC-Vda-129737 Verticillium dahliae 28.33 8.00e-24 105.00
IUUC-Vpa-130505 Vicugna pacos 88.57 0.00e+00 700.00
IUUC-Vvi-131088 Vitis vinifera 36.52 5.00e-23 102.00
IUUC-Xtr-132799 Xenopus tropicalis 79.40 0.00e+00 739.00
IUUC-Xma-133345 Xiphophorus maculatus 65.03 3.00e-174 604.00
IUUC-Yli-134416 Yarrowia lipolytica 32.10 2.00e-31 130.00
IUUC-Zma-134750 Zea mays 36.67 4.00e-25 109.00
Created Date 25-Jun-2017

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