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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Sce-106329
Ensembl Protein ID YPR137W
UniProt Accession Q06506; D6W4D3; RRP9_YEAST
Genbank Protein ID AAB68277.1; DAA11549.1
Protein Name Ribosomal RNA-processing protein 9
Genbank Nucleotide ID U40829; BK006949
Gene Name RRP9; YPR137W
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
YPR137W YPR137W YPR137W
Annotation
mRNA Expression
GEOFFGED
Protein-protein Interaction
IIDiRefIndexHINTMentha
Protein 3D Structure
PDBMMDB
Post-translational Modifications (PTMs)
CPLMdbPAFdbPTMUniProt
BioGRID
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.20e-15 54.7 234 268
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtg 33
           gH d++  +a  +d +++v+G++D ++ vW++ + 
   Q: 234  GHYDEILTVAAsPDgKYVVTGGRDRKLIVWSTESL 268
           788999999989999***************98765 PP
   
Organism Saccharomyces cerevisiae
Functional Description
(View)

Functional Description


     Involved in nucleolar processing of pre-18S ribosomal RNA. Required for efficient pre-rRNA cleavage at sites A0, A1 and A2, and biosynthesis of 18S rRNA.
 Involved in nucleolar processing of pre-18S ribosomal RNA. Required for efficient pre-rRNA cleavage at sites A0, A1 and A2, and biosynthesis of 18S rRNA.
Protein Sequence
(Fasta)
MSDVTQQKKR KRSKGEVNPS KPTVDEEITD PSSNEDEQLE VSDEEDALES EEEFEGENPA 60
DKRRRLAKQY LENLKSEAND ILTDNRNAEE KDLNNLKERT IDEYNNFDAG DLDKDIIASR 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Sce-106329|E3,WD_repeat|Saccharomyces cerevisiae
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGTCAGATG TTACCCAACA GAAAAAGAGG AAAAGATCCA AAGGAGAAGT TAATCCATCA 60
AAACCCACAG TAGACGAAGA AATCACAGAT CCATCCTCAA ACGAAGATGA ACAACTAGAA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Sce-106329|E3,WD_repeat|Saccharomyces cerevisiae
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0007--Acetylation
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0687--Ribonucleoprotein
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat
Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
SMART

SM00320--WD40
Gene Ontology

GO:0031428--C:box C/D snoRNP complex
GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0031167--P:rRNA methylation
GO:0000154--P:rRNA modification
GO:0006364--P:rRNA processing
KEGG sce:YPR137W
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000586 Aegilops tauschii 22.45 6.00e-17 80.10
IUUC-Aml-002072 Ailuropoda melanoleuca 26.95 3.00e-48 184.00
IUUC-Atr-002824 Amborella trichopoda 25.61 5.00e-25 107.00
IUUC-Apl-003264 Anas platyrhynchos 28.88 4.00e-46 176.00
IUUC-Aca-004898 Anolis carolinensis 30.59 4.00e-52 196.00
IUUC-Aly-005535 Arabidopsis lyrata 27.11 2.00e-29 121.00
IUUC-Ath-007003 Arabidopsis thaliana 27.08 9.00e-31 125.00
IUUC-Ago-007710 Ashbya gossypii 67.50 0.00e+00 751.00
IUUC-Acl-008345 Aspergillus clavatus 31.48 1.00e-61 229.00
IUUC-Afl-008718 Aspergillus flavus 30.49 7.00e-64 236.00
IUUC-Afu-008966 Aspergillus fumigatus 29.79 8.00e-64 236.00
IUUC-Ani-009214 Aspergillus nidulans 31.62 1.00e-67 248.00
IUUC-Ang-009774 Aspergillus niger 32.58 2.00e-65 241.00
IUUC-Aor-009956 Aspergillus oryzae 30.49 7.00e-64 236.00
IUUC-Ate-010449 Aspergillus terreus 32.23 1.00e-64 239.00
IUUC-Ame-011860 Astyanax mexicanus 27.56 1.00e-52 198.00
IUUC-Bgr-012213 Blumeria graminis 33.95 7.00e-85 306.00
IUUC-Bta-012698 Bos taurus 26.73 6.00e-50 189.00
IUUC-Bci-013973 Botrytis cinerea 35.52 9.00e-84 302.00
IUUC-Bdi-014790 Brachypodium distachyon 27.44 9.00e-31 125.00
IUUC-Bol-016068 Brassica oleracea 24.36 3.00e-27 114.00
IUUC-Bra-017410 Brassica rapa 28.95 5.00e-26 110.00
IUUC-Cel-018616 Caenorhabditis elegans 32.32 4.00e-44 170.00
IUUC-Cja-019532 Callithrix jacchus 27.07 1.00e-49 188.00
IUUC-Cfa-020961 Canis familiaris 25.42 1.00e-44 171.00
IUUC-Cpo-021527 Cavia porcellus 26.95 8.00e-50 189.00
IUUC-Csa-023106 Chlorocebus sabaeus 27.39 6.00e-51 192.00
IUUC-Cin-025670 Ciona intestinalis 28.45 9.00e-48 182.00
IUUC-Csv-026172 Ciona savignyi 29.09 9.00e-43 165.00
IUUC-Cgl-026619 Colletotrichum gloeosporioides 34.42 1.00e-73 268.00
IUUC-Cne-027070 Cryptococcus neoformans 28.89 4.00e-49 187.00
IUUC-Cme-027125 Cyanidioschyzon merolae 24.44 2.00e-17 81.60
IUUC-Dre-027919 Danio rerio 28.44 2.00e-51 194.00
IUUC-Dno-029684 Dasypus novemcinctus 27.17 1.00e-40 158.00
IUUC-Dor-030363 Dipodomys ordii 26.69 4.00e-26 110.00
IUUC-Dse-031503 Dothistroma septosporum 34.48 8.00e-83 299.00
IUUC-Dme-031979 Drosophila melanogaster 23.23 5.00e-34 136.00
IUUC-Eca-033735 Equus caballus 27.17 5.00e-50 189.00
IUUC-Fca-036193 Felis catus 26.79 9.00e-49 185.00
IUUC-Fal-037058 Ficedula albicollis 28.93 1.00e-50 191.00
IUUC-Fox-038036 Fusarium oxysporum 37.72 4.00e-87 313.00
IUUC-Fso-038298 Fusarium solani 36.84 7.00e-84 302.00
IUUC-Gmo-038796 Gadus morhua 30.34 2.00e-42 164.00
IUUC-Ggr-040074 Gaeumannomyces graminis 33.15 2.00e-80 291.00
IUUC-Gga-040743 Gallus gallus 29.70 1.00e-43 167.00
IUUC-Gac-042583 Gasterosteus aculeatus 26.97 1.00e-49 188.00
IUUC-Gma-042659 Glycine max 25.66 3.00e-34 137.00
IUUC-Ggo-045543 Gorilla gorilla 27.39 1.00e-51 195.00
IUUC-Hsa-047017 Homo sapiens 27.39 2.00e-51 194.00
IUUC-Hvu-047173 Hordeum vulgare 27.81 4.00e-34 137.00
IUUC-Itr-048062 Ictidomys tridecemlineatus 27.17 5.00e-49 186.00
IUUC-Kpa-049262 Komagataella pastoris 48.62 5.00e-130 455.00
IUUC-Lch-050566 Latimeria chalumnae 26.85 2.00e-42 164.00
IUUC-Lpe-051651 Leersia perrieri 27.79 2.00e-33 134.00
IUUC-Loc-051997 Lepisosteus oculatus 29.42 5.00e-51 193.00
IUUC-Lma-053182 Leptosphaeria maculans 30.16 2.00e-67 248.00
IUUC-Laf-054105 Loxodonta africana 27.33 2.00e-49 188.00
IUUC-Mcc-055215 Macaca mulatta 27.39 5.00e-51 192.00
IUUC-Meu-055943 Macropus eugenii 26.50 3.00e-44 170.00
IUUC-Mor-057069 Magnaporthe oryzae 33.67 2.00e-77 281.00
IUUC-Mpo-057358 Magnaporthe poae 32.72 6.00e-75 273.00
IUUC-Mtr-058209 Medicago truncatula 28.36 2.00e-33 134.00
IUUC-Mla-059043 Melampsora laricipopulina 32.96 3.00e-45 174.00
IUUC-Mga-060024 Meleagris gallopavo 28.84 6.00e-46 175.00
IUUC-Mvi-060371 Microbotryum violaceum 30.00 3.00e-61 227.00
IUUC-Mmr-061403 Microcebus murinus 26.40 2.00e-48 184.00
IUUC-Mdo-063026 Monodelphis domestica 26.94 1.00e-47 181.00
IUUC-Mmu-063646 Mus musculus 26.50 1.00e-48 185.00
IUUC-Mac-065149 Musa acuminata 26.22 1.00e-37 148.00
IUUC-Mpu-065760 Mustela putorius furo 27.39 1.00e-48 185.00
IUUC-Mlu-067963 Myotis lucifugus 26.54 1.00e-49 188.00
IUUC-Nfi-068288 Neosartorya fischeri 31.25 1.00e-67 248.00
IUUC-Ncr-068679 Neurospora crassa 33.90 3.00e-68 250.00
IUUC-Nle-069766 Nomascus leucogenys 27.56 5.00e-51 193.00
IUUC-Opr-070906 Ochotona princeps 26.06 5.00e-48 183.00
IUUC-Ont-071661 Oreochromis niloticus 28.26 2.00e-52 197.00
IUUC-Oan-073465 Ornithorhynchus anatinus 21.46 3.00e-20 90.90
IUUC-Ocu-074263 Oryctolagus cuniculus 26.73 2.00e-49 188.00
IUUC-Oba-075607 Oryza barthii 26.49 4.00e-31 127.00
IUUC-Ogl-077387 Oryza glaberrima 25.39 7.00e-32 129.00
IUUC-Ogu-078323 Oryza glumaepatula 25.17 1.00e-31 129.00
IUUC-Oin-079977 Oryza indica 25.89 7.00e-16 76.30
IUUC-Olo-080857 Oryza longistaminata 25.17 2.00e-31 128.00
IUUC-Ome-081568 Oryza meridionalis 24.78 7.00e-31 126.00
IUUC-Oni-082685 Oryza nivara 25.74 3.00e-34 137.00
IUUC-Opu-084049 Oryza punctata 26.75 8.00e-32 129.00
IUUC-Oru-084348 Oryza rufipogon 25.74 3.00e-34 137.00
IUUC-Osa-086076 Oryza sativa 25.74 3.00e-34 137.00
IUUC-Ola-086991 Oryzias latipes 29.33 1.00e-50 192.00
IUUC-Olu-087891 Ostreococcus lucimarinus 24.75 5.00e-31 126.00
IUUC-Oga-088991 Otolemur garnettii 26.95 8.00e-51 192.00
IUUC-Oar-090430 Ovis aries 27.17 4.00e-50 190.00
IUUC-Ptr-091359 Pan troglodytes 27.39 4.00e-51 193.00
IUUC-Pan-092499 Papio anubis 27.39 7.00e-51 192.00
IUUC-Pma-094447 Petromyzon marinus 24.12 2.00e-34 138.00
IUUC-Pno-095008 Phaeosphaeria nodorum 30.13 2.00e-68 251.00
IUUC-Ppa-095680 Physcomitrella patens 27.99 5.00e-33 133.00
IUUC-Pfo-096430 Poecilia formosa 28.70 1.00e-52 198.00
IUUC-Pab-097649 Pongo abelii 27.17 4.00e-51 193.00
IUUC-Pop-100037 Populus trichocarpa 25.89 3.00e-36 144.00
IUUC-Pca-100317 Procavia capensis 36.88 1.00e-25 108.00
IUUC-Ppe-101999 Prunus persica 26.71 3.00e-33 134.00
IUUC-Pva-103046 Pteropus vampyrus 26.54 6.00e-51 192.00
IUUC-Pgr-103655 Puccinia graminis 29.16 3.00e-58 217.00
IUUC-Ptt-103812 Puccinia triticina 28.98 6.00e-47 179.00
IUUC-Pte-104243 Pyrenophora teres 30.87 5.00e-70 256.00
IUUC-Pyt-104512 Pyrenophora triticirepentis 31.24 5.00e-71 259.00
IUUC-Rno-104973 Rattus norvegicus 26.73 1.00e-48 185.00
IUUC-Sha-106941 Sarcophilus harrisii 26.77 1.00e-46 178.00
IUUC-Sja-107821 Schizosaccharomyces japonicus 36.96 1.00e-79 288.00
IUUC-Spo-108329 Schizosaccharomyces pombe 32.34 6.00e-71 259.00
IUUC-Ssl-108552 Sclerotinia sclerotiorum 36.38 4.00e-84 303.00
IUUC-Smo-109198 Selaginella moellendorffii 23.79 5.00e-31 126.00
IUUC-Sit-109694 Setaria italica 28.05 1.00e-35 142.00
IUUC-Sly-111294 Solanum lycopersicum 28.06 1.00e-34 138.00
IUUC-Stu-112747 Solanum tuberosum 26.99 2.00e-35 141.00
IUUC-Sar-113315 Sorex araneus 24.48 8.00e-12 62.80
IUUC-Sbi-114694 Sorghum bicolor 25.94 6.00e-35 139.00
IUUC-Sre-114937 Sporisorium reilianum 29.09 4.00e-62 230.00
IUUC-Ssc-116127 Sus scrofa 26.95 8.00e-49 186.00
IUUC-Tgu-117242 Taeniopygia guttata 28.66 7.00e-32 128.00
IUUC-Tru-118285 Takifugu rubripes 27.83 7.00e-54 202.00
IUUC-Tsy-119375 Tarsius syrichta 26.21 2.00e-07 49.30
IUUC-Tni-120368 Tetraodon nigroviridis 28.73 3.00e-50 190.00
IUUC-Tca-121724 Theobroma cacao 22.98 2.00e-28 118.00
IUUC-Tre-122106 Trichoderma reesei 35.08 1.00e-85 308.00
IUUC-Tvi-122526 Trichoderma virens 34.85 1.00e-87 315.00
IUUC-Tae-122939 Triticum aestivum 27.84 4.00e-34 137.00
IUUC-Tur-126548 Triticum urartu 27.84 5.00e-34 137.00
IUUC-Tme-126985 Tuber melanosporum 36.59 3.00e-85 306.00
IUUC-Tbe-127923 Tupaia belangeri 26.95 1.00e-49 188.00
IUUC-Ttr-129308 Tursiops truncatus 26.06 3.00e-46 177.00
IUUC-Uma-129472 Ustilago maydis 30.77 1.00e-62 232.00
IUUC-Vda-129910 Verticillium dahliae 34.15 6.00e-79 286.00
IUUC-Vvi-131683 Vitis vinifera 25.11 8.00e-34 136.00
IUUC-Xtr-132118 Xenopus tropicalis 29.04 1.00e-51 195.00
IUUC-Xma-133804 Xiphophorus maculatus 28.67 3.00e-53 200.00
IUUC-Yli-134639 Yarrowia lipolytica 44.34 2.00e-116 410.00
IUUC-Zma-135884 Zea mays 26.61 2.00e-36 144.00
Created Date 25-Jun-2017

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