iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Xtr-132713

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AAMC01107498

Gene Name

prpf4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSXETG00000026231.2	ENSXETT00000055426.2	ENSXETP00000055426.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.10e-18	64.2	427	457

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWD 29
           gH+++v +++  +d  l++++s+D t k+W 
   Q: 427  GHEGKVMGVDIsPDgELIATCSYDRTFKLWA 457
           8***********999***************5 PP

Organism

Xenopus tropicalis

Protein Sequence
(Fasta)

MSDDEGPPVV KRSRIFYGSL ADKERERLAK GEAPMGRSAV RAGIDAGNIN ISGGESNRCA 60
PAIPSPQCYS CTDSGALRRE RPFLGQREAV PWAERGRSLG RGAVPWAEGP FLGQREALRN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCGGATG ATGAAGGGCC CCCCGTGGTG AAAAGGTCGC GCATATTCTA CGGCAGCCTG 60
GCCGACAAGG AGAGGGAGCG TCTGGCCAAG GGGGAGGCCC CGATGGGCAG GTCGGCGGTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0046540--C:U4/U6 x U5 tri-snRNP complex
GO:0030621--F:U4 snRNA binding
GO:0017070--F:U6 snRNA binding
GO:0043009--P:chordate embryonic development
GO:0000398--P:mRNA splicing, via spliceosome
GO:0060041--P:retina development in camera-type eye

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001737	Ailuropoda melanoleuca	49.12	4.00e-109	388.00
IUUC-Apl-003723	Anas platyrhynchos	48.53	6.00e-107	380.00
IUUC-Aca-004972	Anolis carolinensis	49.61	9.00e-95	340.00
IUUC-Ame-011697	Astyanax mexicanus	42.55	3.00e-73	269.00
IUUC-Bta-012615	Bos taurus	48.33	6.00e-102	364.00
IUUC-Cel-018632	Caenorhabditis elegans	27.15	5.00e-31	129.00
IUUC-Cja-019747	Callithrix jacchus	49.12	1.00e-109	389.00
IUUC-Cfa-020288	Canis familiaris	49.12	2.00e-109	389.00
IUUC-Cpo-021440	Cavia porcellus	47.65	4.00e-105	375.00
IUUC-Csa-023139	Chlorocebus sabaeus	46.43	5.00e-68	250.00
IUUC-Cho-024481	Choloepus hoffmanni	48.55	3.00e-81	295.00
IUUC-Cin-025106	Ciona intestinalis	34.71	7.00e-63	234.00
IUUC-Csv-026087	Ciona savignyi	33.53	1.00e-57	217.00
IUUC-Dre-028723	Danio rerio	47.16	7.00e-97	347.00
IUUC-Dno-029299	Dasypus novemcinctus	48.72	2.00e-108	385.00
IUUC-Dor-030345	Dipodomys ordii	65.94	9.00e-38	151.00
IUUC-Dme-031783	Drosophila melanogaster	35.73	2.00e-44	173.00
IUUC-Ete-032669	Echinops telfairi	48.92	2.00e-108	385.00
IUUC-Eca-033566	Equus caballus	49.12	4.00e-109	388.00
IUUC-Eeu-034524	Erinaceus europaeus	38.11	1.00e-34	140.00
IUUC-Fca-036215	Felis catus	49.12	3.00e-109	389.00
IUUC-Fal-037018	Ficedula albicollis	43.97	6.00e-80	291.00
IUUC-Gga-040797	Gallus gallus	48.81	2.00e-106	379.00
IUUC-Gac-042598	Gasterosteus aculeatus	34.03	1.00e-48	187.00
IUUC-Ggo-044682	Gorilla gorilla	49.22	3.00e-107	382.00
IUUC-Hsa-045804	Homo sapiens	49.12	7.00e-109	387.00
IUUC-Itr-047882	Ictidomys tridecemlineatus	49.12	5.00e-109	387.00
IUUC-Lch-050074	Latimeria chalumnae	46.98	1.00e-100	360.00
IUUC-Loc-052164	Lepisosteus oculatus	42.89	7.00e-80	291.00
IUUC-Laf-053460	Loxodonta africana	49.12	3.00e-109	388.00
IUUC-Mcc-055859	Macaca mulatta	49.12	3.00e-109	389.00
IUUC-Meu-056134	Macropus eugenii	48.53	8.00e-108	384.00
IUUC-Mga-059855	Meleagris gallopavo	48.04	3.00e-104	372.00
IUUC-Mmr-060826	Microcebus murinus	48.92	1.00e-108	387.00
IUUC-Mdo-062748	Monodelphis domestica	49.12	2.00e-108	386.00
IUUC-Mmu-063351	Mus musculus	48.72	3.00e-108	385.00
IUUC-Mpu-066006	Mustela putorius furo	49.12	3.00e-109	389.00
IUUC-Mlu-067398	Myotis lucifugus	49.31	4.00e-109	388.00
IUUC-Nle-069982	Nomascus leucogenys	49.12	1.00e-109	389.00
IUUC-Opr-070596	Ochotona princeps	49.51	4.00e-110	391.00
IUUC-Ont-072374	Oreochromis niloticus	42.86	3.00e-72	265.00
IUUC-Oan-073166	Ornithorhynchus anatinus	51.40	3.00e-88	318.00
IUUC-Ocu-074371	Oryctolagus cuniculus	49.31	1.00e-109	390.00
IUUC-Ola-086940	Oryzias latipes	41.74	4.00e-69	255.00
IUUC-Oga-088703	Otolemur garnettii	49.22	7.00e-109	387.00
IUUC-Oar-089829	Ovis aries	48.53	2.00e-102	366.00
IUUC-Ptr-090838	Pan troglodytes	49.12	7.00e-109	387.00
IUUC-Pan-092261	Papio anubis	48.72	3.00e-109	388.00
IUUC-Psi-093020	Pelodiscus sinensis	50.29	8.00e-110	390.00
IUUC-Pfo-096812	Poecilia formosa	40.71	3.00e-68	252.00
IUUC-Pab-097805	Pongo abelii	48.03	1.00e-103	369.00
IUUC-Pca-100152	Procavia capensis	49.31	1.00e-109	390.00
IUUC-Pva-102529	Pteropus vampyrus	47.75	3.00e-104	372.00
IUUC-Rno-105747	Rattus norvegicus	48.72	3.00e-108	385.00
IUUC-Sha-107334	Sarcophilus harrisii	48.72	3.00e-108	385.00
IUUC-Sar-113266	Sorex araneus	43.44	3.00e-79	289.00
IUUC-Ssc-115443	Sus scrofa	49.12	5.00e-109	387.00
IUUC-Tgu-117157	Taeniopygia guttata	47.69	8.00e-98	350.00
IUUC-Tru-118587	Takifugu rubripes	40.55	1.00e-66	247.00
IUUC-Tsy-119157	Tarsius syrichta	52.16	2.00e-89	323.00
IUUC-Tni-120427	Tetraodon nigroviridis	40.76	4.00e-70	258.00
IUUC-Tbe-128136	Tupaia belangeri	45.78	3.00e-97	348.00
IUUC-Ttr-129169	Tursiops truncatus	60.99	4.00e-64	238.00
IUUC-Vpa-130440	Vicugna pacos	48.92	1.00e-108	386.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence