iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Oga-088047

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AAQR03151296

Gene Name

USP39

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSOGAG00000012291.2	ENSOGAT00000012295.2	ENSOGAP00000010997.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	8.10e-20	71.3	239	475

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 16   LQcLsnipelrelllekkkeklneenpkepkgellkslqklfeelw..kskkkavsprellkalkkeaee.fsgyeqqDaqEflaflld 101
           L +Lsn+p+lr+++le+++ k  ++ p +    l++ + +l+++lw   + k +vsp+e+l+a+  ++++ f+ ++q   q+++++ l 
   Q: 239  LEALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWnpRNFKAHVSPHEMLQAVVLCSKKtFQITKQGKEQDVFSQALY 327
           889****************9999***********************999999**************99999****************** PP
   S: 102  qleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlk................sqikclecdnvssreepfldlsl 174
           q+e +l                          kkkk+k +++d+Fqg+++                +q+  ++  +++  e++f++l+l
   Q: 328  QMEIKL-----------------------CATKKKKKKAIVTDVFQGSMRiftkklphpdlpaeekEQLLHNDEYQETMVESTFMYLTL 393
           ******.......................2456777788888888888888888888888888888*********************** PP
   S: 175  pvpgkeetkke.........slqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekinkkve 254
           ++p     k e          l ++L++f    e e    y++ k     +  k+++l+klP++Li+ +kRf  ++++ + ek+ + v+
   Q: 394  DLPTAPLYKDEkeqliipqvPLFNILAKFNGITEKE----YKTYK----ENFLKRFQLTKLPPYLIFCIKRF--TKNNFFVEKNPTIVN 472
           ***877776664455566666666666666666655....44333....3489*******************..88889********** PP
   S: 255  fpl 257
           fp+
   Q: 473  FPI 475
           **7 PP

Organism

Otolemur garnettii

Protein Sequence
(Fasta)

MSSRSKRESR GSTRGKRESE SRSSSGRVKR ERDREREPET TSSRSSPVRV KREVEPASAR 60
EAPAPVFPAV RVKREREADE DSEPEREVRV YLGIVDSENR FPVNCILNLI VNRSVLDFDF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCTAGCC GGTCCAAACG GGAGTCTCGT GGTTCCACCC GCGGAAAGCG TGAGTCCGAG 60
TCCCGGAGCA GCTCAGGTCG CGTTAAGCGG GAGCGAGATC GAGAGCGGGA GCCCGAGACG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001394--Peptidase_C19_UCH
IPR033809--USP39
IPR028889--USP_dom
IPR013083--Znf_RING/FYVE/PHD
IPR001607--Znf_UBP

PROSITE

PS50235--USP_3
PS50271--ZF_UBP

Pfam

PF00443--UCH
PF02148--zf-UBP

SMART

SM00290--ZnF_UBP

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0008270--F:zinc ion binding
GO:0016579--P:protein deubiquitination
GO:0000245--P:spliceosomal complex assembly

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000483	Aegilops tauschii	46.72	3.00e-75	275.00
IUUC-Aml-001846	Ailuropoda melanoleuca	80.87	0.00e+00	692.00
IUUC-Atr-002758	Amborella trichopoda	44.25	7.00e-73	268.00
IUUC-Apl-003336	Anas platyrhynchos	87.92	1.00e-117	416.00
IUUC-Aca-004846	Anolis carolinensis	81.03	2.00e-169	588.00
IUUC-Aly-005683	Arabidopsis lyrata	44.71	6.00e-64	238.00
IUUC-Ath-007661	Arabidopsis thaliana	44.44	1.00e-64	240.00
IUUC-Ago-007802	Ashbya gossypii	29.95	4.00e-39	155.00
IUUC-Acl-008304	Aspergillus clavatus	40.43	1.00e-58	221.00
IUUC-Afl-008735	Aspergillus flavus	63.86	5.00e-31	129.00
IUUC-Afu-009100	Aspergillus fumigatus	39.52	4.00e-57	215.00
IUUC-Ani-009138	Aspergillus nidulans	41.76	2.00e-62	233.00
IUUC-Ang-009661	Aspergillus niger	40.53	5.00e-59	222.00
IUUC-Aor-010235	Aspergillus oryzae	39.95	2.00e-57	216.00
IUUC-Ate-010346	Aspergillus terreus	34.12	6.00e-38	152.00
IUUC-Ame-011688	Astyanax mexicanus	77.78	1.00e-156	546.00
IUUC-Bgr-011998	Blumeria graminis	43.62	1.00e-73	270.00
IUUC-Bta-013407	Bos taurus	81.67	0.00e+00	654.00
IUUC-Bci-013977	Botrytis cinerea	45.89	5.00e-76	278.00
IUUC-Bdi-014361	Brachypodium distachyon	45.97	1.00e-76	280.00
IUUC-Bol-015968	Brassica oleracea	44.18	2.00e-62	233.00
IUUC-Bra-017952	Brassica rapa	44.44	8.00e-64	237.00
IUUC-Cel-018491	Caenorhabditis elegans	53.91	4.00e-109	388.00
IUUC-Cja-019134	Callithrix jacchus	80.27	0.00e+00	690.00
IUUC-Cfa-020098	Canis familiaris	81.09	0.00e+00	695.00
IUUC-Cpo-021595	Cavia porcellus	80.84	0.00e+00	635.00
IUUC-Csa-024121	Chlorocebus sabaeus	80.65	0.00e+00	681.00
IUUC-Cho-025057	Choloepus hoffmanni	70.59	5.00e-43	168.00
IUUC-Cin-025473	Ciona intestinalis	62.22	2.00e-31	129.00
IUUC-Csv-025815	Ciona savignyi	63.32	1.00e-81	296.00
IUUC-Cgl-026416	Colletotrichum gloeosporioides	42.52	5.00e-75	275.00
IUUC-Cne-026802	Cryptococcus neoformans	42.52	3.00e-66	246.00
IUUC-Dre-027870	Danio rerio	75.13	3.00e-154	538.00
IUUC-Dno-029655	Dasypus novemcinctus	77.57	0.00e+00	659.00
IUUC-Dor-030762	Dipodomys ordii	80.27	0.00e+00	643.00
IUUC-Dse-031441	Dothistroma septosporum	41.53	5.00e-72	265.00
IUUC-Dme-032101	Drosophila melanogaster	54.71	7.00e-115	407.00
IUUC-Ete-032841	Echinops telfairi	77.80	0.00e+00	659.00
IUUC-Eca-033463	Equus caballus	81.02	0.00e+00	649.00
IUUC-Eeu-034438	Erinaceus europaeus	64.81	4.00e-111	395.00
IUUC-Fca-035774	Felis catus	81.32	0.00e+00	696.00
IUUC-Fal-036988	Ficedula albicollis	75.13	2.00e-165	575.00
IUUC-Fox-037895	Fusarium oxysporum	42.97	1.00e-67	250.00
IUUC-Fso-038450	Fusarium solani	44.30	6.00e-70	258.00
IUUC-Gmo-038874	Gadus morhua	74.41	1.00e-157	549.00
IUUC-Ggr-040115	Gaeumannomyces graminis	41.58	4.00e-71	262.00
IUUC-Gac-041650	Gasterosteus aculeatus	73.11	8.00e-159	553.00
IUUC-Gma-043002	Glycine max	45.85	5.00e-75	275.00
IUUC-Ggo-044707	Gorilla gorilla	81.20	0.00e+00	718.00
IUUC-Hsa-046041	Homo sapiens	80.88	0.00e+00	683.00
IUUC-Hvu-047816	Hordeum vulgare	42.93	7.00e-74	271.00
IUUC-Itr-048945	Ictidomys tridecemlineatus	77.88	6.00e-146	509.00
IUUC-Lch-050419	Latimeria chalumnae	78.01	5.00e-167	580.00
IUUC-Lpe-051593	Leersia perrieri	47.31	3.00e-79	289.00
IUUC-Loc-052930	Lepisosteus oculatus	72.46	5.00e-159	553.00
IUUC-Lma-053256	Leptosphaeria maculans	44.05	9.00e-76	277.00
IUUC-Laf-053555	Loxodonta africana	80.88	0.00e+00	654.00
IUUC-Mcc-055630	Macaca mulatta	80.65	0.00e+00	681.00
IUUC-Meu-056579	Macropus eugenii	91.95	3.00e-122	432.00
IUUC-Mor-057078	Magnaporthe oryzae	40.90	4.00e-69	255.00
IUUC-Mpo-057607	Magnaporthe poae	37.80	7.00e-66	244.00
IUUC-Mtr-058644	Medicago truncatula	45.26	4.00e-73	268.00
IUUC-Mla-059120	Melampsora laricipopulina	36.32	6.00e-64	238.00
IUUC-Mvi-060429	Microbotryum violaceum	37.14	2.00e-42	166.00
IUUC-Mmr-061313	Microcebus murinus	81.63	0.00e+00	654.00
IUUC-Mdo-062801	Monodelphis domestica	75.31	0.00e+00	678.00
IUUC-Mmu-064424	Mus musculus	79.17	0.00e+00	646.00
IUUC-Mac-064694	Musa acuminata	46.08	6.00e-75	274.00
IUUC-Mpu-065980	Mustela putorius furo	81.55	2.00e-152	532.00
IUUC-Mlu-067007	Myotis lucifugus	79.88	0.00e+00	660.00
IUUC-Nfi-068274	Neosartorya fischeri	39.52	4.00e-57	216.00
IUUC-Ncr-068829	Neurospora crassa	44.56	1.00e-72	267.00
IUUC-Nle-069171	Nomascus leucogenys	80.88	5.00e-176	610.00
IUUC-Opr-070494	Ochotona princeps	72.34	6.00e-153	533.00
IUUC-Ont-072290	Oreochromis niloticus	70.94	9.00e-162	563.00
IUUC-Oan-073099	Ornithorhynchus anatinus	78.88	5.00e-173	600.00
IUUC-Ocu-074642	Oryctolagus cuniculus	80.41	0.00e+00	646.00
IUUC-Oba-075886	Oryza barthii	46.77	2.00e-78	286.00
IUUC-Obr-076220	Oryza brachyantha	46.51	9.00e-79	287.00
IUUC-Ogl-077682	Oryza glaberrima	46.77	1.00e-78	286.00
IUUC-Ogu-078492	Oryza glumaepatula	46.77	2.00e-78	286.00
IUUC-Oin-079956	Oryza indica	46.77	2.00e-78	286.00
IUUC-Olo-080239	Oryza longistaminata	43.60	9.00e-73	269.00
IUUC-Ome-081573	Oryza meridionalis	46.77	7.00e-79	288.00
IUUC-Oni-082975	Oryza nivara	46.77	2.00e-78	286.00
IUUC-Opu-083724	Oryza punctata	46.77	6.00e-79	288.00
IUUC-Oru-084566	Oryza rufipogon	46.77	1.00e-78	286.00
IUUC-Osa-086008	Oryza sativa	46.77	1.00e-78	287.00
IUUC-Ola-086967	Oryzias latipes	76.15	3.00e-160	558.00
IUUC-Olu-087614	Ostreococcus lucimarinus	37.47	1.00e-53	203.00
IUUC-Oar-089393	Ovis aries	81.52	0.00e+00	689.00
IUUC-Ptr-090561	Pan troglodytes	81.11	0.00e+00	685.00
IUUC-Pan-091812	Papio anubis	80.41	0.00e+00	677.00
IUUC-Psi-093507	Pelodiscus sinensis	91.39	1.00e-104	372.00
IUUC-Pno-095104	Phaeosphaeria nodorum	43.90	2.00e-73	270.00
IUUC-Ppa-095995	Physcomitrella patens	44.05	1.00e-77	283.00
IUUC-Pfo-096754	Poecilia formosa	74.61	7.00e-161	560.00
IUUC-Pab-098053	Pongo abelii	81.11	0.00e+00	685.00
IUUC-Pop-099230	Populus trichocarpa	45.50	8.00e-78	284.00
IUUC-Pca-100407	Procavia capensis	72.58	3.00e-161	561.00
IUUC-Ppe-101699	Prunus persica	45.04	8.00e-73	268.00
IUUC-Pva-103159	Pteropus vampyrus	78.96	0.00e+00	681.00
IUUC-Pgr-103433	Puccinia graminis	39.23	5.00e-68	252.00
IUUC-Ptt-103701	Puccinia triticina	35.81	1.00e-55	210.00
IUUC-Pte-104281	Pyrenophora teres	44.05	3.00e-76	279.00
IUUC-Pyt-104714	Pyrenophora triticirepentis	44.05	5.00e-76	278.00
IUUC-Rno-105531	Rattus norvegicus	80.21	0.00e+00	694.00
IUUC-Sce-106368	Saccharomyces cerevisiae	28.69	8.00e-28	118.00
IUUC-Sha-107093	Sarcophilus harrisii	80.10	0.00e+00	651.00
IUUC-Sja-108004	Schizosaccharomyces japonicus	39.57	6.00e-72	264.00
IUUC-Spo-108018	Schizosaccharomyces pombe	41.35	1.00e-68	253.00
IUUC-Ssl-108460	Sclerotinia sclerotiorum	43.24	1.00e-66	247.00
IUUC-Smo-108892	Selaginella moellendorffii	44.97	2.00e-76	279.00
IUUC-Sit-110782	Setaria italica	47.21	3.00e-78	286.00
IUUC-Sly-111308	Solanum lycopersicum	46.02	4.00e-82	298.00
IUUC-Stu-112447	Solanum tuberosum	45.81	4.00e-82	298.00
IUUC-Sar-113352	Sorex araneus	73.54	9.00e-155	540.00
IUUC-Sbi-114806	Sorghum bicolor	47.88	2.00e-78	286.00
IUUC-Sre-115059	Sporisorium reilianum	45.45	4.00e-44	172.00
IUUC-Ssc-115677	Sus scrofa	78.22	4.00e-166	577.00
IUUC-Tru-118478	Takifugu rubripes	75.61	4.00e-159	554.00
IUUC-Tsy-119082	Tarsius syrichta	78.21	7.00e-148	516.00
IUUC-Tni-120419	Tetraodon nigroviridis	74.33	3.00e-154	538.00
IUUC-Tca-121294	Theobroma cacao	43.03	2.00e-79	290.00
IUUC-Tre-121962	Trichoderma reesei	43.01	2.00e-65	243.00
IUUC-Tvi-122280	Trichoderma virens	42.48	1.00e-71	264.00
IUUC-Tae-125467	Triticum aestivum	47.03	2.00e-77	283.00
IUUC-Tur-126551	Triticum urartu	47.03	5.00e-77	281.00
IUUC-Tme-126959	Tuber melanosporum	42.70	8.00e-73	268.00
IUUC-Tbe-127737	Tupaia belangeri	79.37	8.00e-179	620.00
IUUC-Ttr-129211	Tursiops truncatus	73.56	1.00e-120	427.00
IUUC-Uma-129591	Ustilago maydis	35.05	3.00e-56	213.00
IUUC-Vda-129674	Verticillium dahliae	41.76	4.00e-64	239.00
IUUC-Vpa-130793	Vicugna pacos	76.04	5.00e-168	584.00
IUUC-Xtr-132430	Xenopus tropicalis	75.26	3.00e-164	571.00
IUUC-Xma-133515	Xiphophorus maculatus	76.69	3.00e-161	561.00
IUUC-Yli-134488	Yarrowia lipolytica	34.74	3.00e-49	189.00
IUUC-Zma-134748	Zea mays	47.62	2.00e-78	286.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence