iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Tru-118745

UUCD1 version

UUC-TaR-00907

Ensembl Protein ID

ENSTRUP00000000282.1

UniProt Accession

H2RJG9; H2RJG9_TAKRU

Protein Name

Uncharacterized protein

Gene Name

chd4a; LOC101069793

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSTRUG00000000137.1	ENSTRUT00000000284.1	ENSTRUP00000000282.1
ENSTRUG00000000137.1	ENSTRUT00000000285.1	ENSTRUP00000000283.1
ENSTRUG00000000137.1	ENSTRUT00000000286.1	ENSTRUP00000000284.1
ENSTRUG00000000137.1	ENSTRUT00000000287.1	ENSTRUP00000000285.1
ENSTRUG00000000137.1	ENSTRUT00000000288.1	ENSTRUP00000000286.1
ENSTRUG00000000137.1	ENSTRUT00000000289.1	ENSTRUP00000000287.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	1.90e-16	61.2	414	458

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           ++C vC++gge    l++C+ C + +H +Cl+++  +e pn e wiCp+C+
   Q: 414  EFCRVCKDGGE----LLCCDSCPSSYHIHCLNPP-LPEIPNGE-WICPRCT 458
           58*********....*******************.*******8.******6 PP

Organism

Takifugu rubripes

Protein Sequence
(Fasta)

DEEEEISENE SRKVKKKKKS KKNREGKGSK RRSRREELTI SSPELMDVSG VEEADDGGPV 60
QCSDSEGSDY TPGRKKKKRL CSSKDKKKKK EPGPEEDDDD DDDDDEDCME PKTSSQLLED 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GATGAGGAAG AAGAGATCTC AGAGAATGAG TCTCGGAAGG TGAAGAAGAA AAAGAAATCC 60
AAAAAAAACA GAGAGGGCAA GGGCAGCAAG AGGCGGTCAC GCAGAGAGGT AACATTAGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR028725--CHD4
IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR009071--HMG_box_dom
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N

SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD

Gene Ontology

GO:0016581--C:NuRD complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding
GO:0006325--P:chromatin organization
GO:0031101--P:fin regeneration
GO:0006355--P:regulation of transcription, DNA-templated
GO:0051225--P:spindle assembly

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001361	Ailuropoda melanoleuca	76.00	0.00e+00	2503.00
IUUC-Bta-013220	Bos taurus	81.05	0.00e+00	2092.00
IUUC-Cel-018108	Caenorhabditis elegans	57.29	0.00e+00	1327.00
IUUC-Cja-019510	Callithrix jacchus	72.78	0.00e+00	1849.00
IUUC-Cpo-021704	Cavia porcellus	81.21	0.00e+00	2104.00
IUUC-Csa-023625	Chlorocebus sabaeus	81.50	0.00e+00	2105.00
IUUC-Cho-024361	Choloepus hoffmanni	80.90	0.00e+00	1332.00
IUUC-Csv-025847	Ciona savignyi	54.72	0.00e+00	1417.00
IUUC-Dre-027505	Danio rerio	80.83	0.00e+00	2631.00
IUUC-Dno-029656	Dasypus novemcinctus	81.23	0.00e+00	2099.00
IUUC-Dme-032150	Drosophila melanogaster	56.39	0.00e+00	1463.00
IUUC-Eca-034112	Equus caballus	81.23	0.00e+00	2099.00
IUUC-Fca-036056	Felis catus	81.23	0.00e+00	2098.00
IUUC-Fal-037312	Ficedula albicollis	83.51	0.00e+00	2106.00
IUUC-Gga-040216	Gallus gallus	78.08	0.00e+00	2513.00
IUUC-Gac-042478	Gasterosteus aculeatus	81.95	0.00e+00	2236.00
IUUC-Gma-043999	Glycine max	43.42	0.00e+00	738.00
IUUC-Hsa-045908	Homo sapiens	80.08	0.00e+00	2110.00
IUUC-Itr-048002	Ictidomys tridecemlineatus	81.23	0.00e+00	2097.00
IUUC-Lch-049948	Latimeria chalumnae	71.46	0.00e+00	1809.00
IUUC-Loc-052144	Lepisosteus oculatus	84.89	0.00e+00	2156.00
IUUC-Mcc-055773	Macaca mulatta	80.16	0.00e+00	2104.00
IUUC-Mga-059633	Meleagris gallopavo	78.21	0.00e+00	2518.00
IUUC-Mmr-060886	Microcebus murinus	79.88	0.00e+00	2105.00
IUUC-Mdo-062872	Monodelphis domestica	84.49	0.00e+00	1906.00
IUUC-Mmu-063672	Mus musculus	81.08	0.00e+00	2094.00
IUUC-Mpu-066692	Mustela putorius furo	81.23	0.00e+00	2098.00
IUUC-Mlu-067785	Myotis lucifugus	81.23	0.00e+00	2095.00
IUUC-Nle-070039	Nomascus leucogenys	79.09	0.00e+00	2089.00
IUUC-Oan-072885	Ornithorhynchus anatinus	60.07	0.00e+00	1470.00
IUUC-Ocu-074177	Oryctolagus cuniculus	80.07	0.00e+00	2113.00
IUUC-Ola-086880	Oryzias latipes	85.99	0.00e+00	2408.00
IUUC-Oga-088970	Otolemur garnettii	79.89	0.00e+00	2097.00
IUUC-Oar-090422	Ovis aries	81.19	0.00e+00	2093.00
IUUC-Pan-092441	Papio anubis	81.50	0.00e+00	2104.00
IUUC-Psi-093530	Pelodiscus sinensis	81.98	0.00e+00	2134.00
IUUC-Ppa-095213	Physcomitrella patens	41.99	0.00e+00	712.00
IUUC-Pab-097959	Pongo abelii	79.07	0.00e+00	2055.00
IUUC-Pva-103186	Pteropus vampyrus	80.31	0.00e+00	2083.00
IUUC-Ssc-115295	Sus scrofa	81.23	0.00e+00	2097.00
IUUC-Tsy-119261	Tarsius syrichta	77.61	0.00e+00	1441.00
IUUC-Ttr-128478	Tursiops truncatus	78.35	0.00e+00	2066.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence