iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           Ht +v+c +f +d +l+vs+s D+tik+WD+++  +
   Q: 143  HTHWVRCAKFsPDgRLIVSCSEDKTIKIWDTTSKQC 178
           9**********999****************998777 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsv 97
           hk+v+t+++fsp+++lla++srd+t+++w ++++ + ++++ h+a+v++v+fs dg++lvt+seD+ ikvw++     +++l +h++ v
   Q: 59   HKDVVTSLQFSPQGNLLASASRDKTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQFLVTASEDKSIKVWSMYRQRFLYSLYRHTHWV 147
           899************************************************************************************** PP
   S: 98   lslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvysl 186
           ++ +fsp+g  +vs s+d+ti++wd+ ++qc++  +s   g+ n v ++p+g +++s++ D +vr+Wd+++++ll++ +  h   v++l
   Q: 148  RCAKFSPDGRLIVSCSEDKTIKIWDTTSKQCVN-NFSDSVGFANFVDFSPNGTCIASAGSDHAVRIWDIRMNRLLQHYQV-HSCGVNCL 234
           *********************************.*********************************************8.******** PP
   S: 187  sfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW..d 250
           sf+++g++lv++s dgtvk+ dl +g+ ++tl+ght +v  v fs+++e++ sg++D ++ +W   
   Q: 235  SFHPSGNSLVTASSDGTVKILDLVEGRLIYTLQGHTGPVFTVSFSKDGELFTSGGADAQVLVWrtS 300
           ***************************************************************440 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MASGPEDPIL ERYFKGHKAA ITSADFSPNC KQIATASWDT FLMLWSLKPH ARAYRYVGHK 60
DVVTSLQFSP QGNLLASASR DKTVRLWVLD RKGKSSEFKA HTAPVRSVDF SADGQFLVTA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTCCCTACCC TTCCCTGCTC CCCCAAGGCC CCGGGTGCCG TCCGCTCCCC GCATGGCCTC 60
CGGCCCGGTA AGGTCCCCGC CGCTACCGGA GCCGACCCTT GGGCAGCGGG ACCGGGGAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005814--C:centriole
GO:0036064--C:ciliary basal body
GO:0000922--C:spindle pole
GO:0008283--P:cell proliferation
GO:0060271--P:cilium assembly
GO:0001895--P:retina homeostasis

KEGG

rno:100362836

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002219	Ailuropoda melanoleuca	81.66	0.00e+00	754.00
IUUC-Apl-004219	Anas platyrhynchos	57.89	7.00e-152	530.00
IUUC-Aca-005197	Anolis carolinensis	55.39	2.00e-159	555.00
IUUC-Ame-011000	Astyanax mexicanus	54.95	9.00e-154	536.00
IUUC-Bta-012706	Bos taurus	82.18	0.00e+00	827.00
IUUC-Cja-019185	Callithrix jacchus	75.94	0.00e+00	750.00
IUUC-Cfa-021274	Canis familiaris	82.45	0.00e+00	814.00
IUUC-Cpo-022351	Cavia porcellus	76.76	0.00e+00	779.00
IUUC-Csa-023032	Chlorocebus sabaeus	76.78	0.00e+00	756.00
IUUC-Cho-024508	Choloepus hoffmanni	70.73	7.00e-175	606.00
IUUC-Cin-025258	Ciona intestinalis	49.48	4.00e-130	457.00
IUUC-Dre-028703	Danio rerio	54.91	1.00e-151	529.00
IUUC-Dno-028915	Dasypus novemcinctus	80.63	0.00e+00	761.00
IUUC-Dor-030306	Dipodomys ordii	69.44	2.00e-177	615.00
IUUC-Dme-032182	Drosophila melanogaster	44.44	7.00e-77	280.00
IUUC-Ete-032353	Echinops telfairi	65.66	3.00e-178	617.00
IUUC-Eca-034136	Equus caballus	81.57	0.00e+00	753.00
IUUC-Eeu-034611	Erinaceus europaeus	74.42	3.00e-173	600.00
IUUC-Fca-036205	Felis catus	80.50	0.00e+00	710.00
IUUC-Fal-036947	Ficedula albicollis	49.58	8.00e-131	460.00
IUUC-Gga-040847	Gallus gallus	55.07	4.00e-153	534.00
IUUC-Ggo-045194	Gorilla gorilla	81.17	0.00e+00	820.00
IUUC-Hsa-047026	Homo sapiens	81.17	0.00e+00	819.00
IUUC-Itr-048943	Ictidomys tridecemlineatus	81.17	0.00e+00	771.00
IUUC-Lch-050067	Latimeria chalumnae	57.38	1.00e-163	569.00
IUUC-Loc-052409	Lepisosteus oculatus	57.51	2.00e-157	548.00
IUUC-Laf-053428	Loxodonta africana	81.36	0.00e+00	792.00
IUUC-Mcc-054772	Macaca mulatta	81.80	0.00e+00	825.00
IUUC-Meu-056496	Macropus eugenii	69.35	4.00e-157	547.00
IUUC-Mga-059276	Meleagris gallopavo	55.70	7.00e-154	536.00
IUUC-Mmr-061525	Microcebus murinus	81.38	0.00e+00	811.00
IUUC-Mdo-062351	Monodelphis domestica	68.05	0.00e+00	699.00
IUUC-Mmu-063834	Mus musculus	91.40	0.00e+00	914.00
IUUC-Mpu-066453	Mustela putorius furo	79.71	0.00e+00	781.00
IUUC-Mlu-067909	Myotis lucifugus	79.46	0.00e+00	744.00
IUUC-Nle-069206	Nomascus leucogenys	80.75	0.00e+00	824.00
IUUC-Opr-070566	Ochotona princeps	70.40	0.00e+00	696.00
IUUC-Oan-073726	Ornithorhynchus anatinus	64.67	2.00e-168	585.00
IUUC-Ocu-074639	Oryctolagus cuniculus	81.59	0.00e+00	826.00
IUUC-Ola-086913	Oryzias latipes	51.16	1.00e-137	482.00
IUUC-Oga-088061	Otolemur garnettii	82.66	2.00e-178	618.00
IUUC-Oar-090228	Ovis aries	78.02	0.00e+00	827.00
IUUC-Ptr-091420	Pan troglodytes	81.38	0.00e+00	822.00
IUUC-Pan-092228	Papio anubis	81.59	0.00e+00	823.00
IUUC-Psi-093309	Pelodiscus sinensis	59.45	8.00e-161	560.00
IUUC-Pma-094425	Petromyzon marinus	54.11	4.00e-143	501.00
IUUC-Pfo-096741	Poecilia formosa	47.72	3.00e-128	451.00
IUUC-Pab-098109	Pongo abelii	82.01	0.00e+00	826.00
IUUC-Pca-101012	Procavia capensis	60.88	9.00e-164	569.00
IUUC-Pva-102712	Pteropus vampyrus	81.34	0.00e+00	819.00
IUUC-Sar-113446	Sorex araneus	71.55	0.00e+00	715.00
IUUC-Ssc-115794	Sus scrofa	83.91	0.00e+00	672.00
IUUC-Tgu-116770	Taeniopygia guttata	50.96	1.00e-131	462.00
IUUC-Tru-117968	Takifugu rubripes	52.92	2.00e-138	485.00
IUUC-Tsy-119316	Tarsius syrichta	68.47	4.00e-179	620.00
IUUC-Tni-119953	Tetraodon nigroviridis	48.46	4.00e-123	434.00
IUUC-Tbe-128071	Tupaia belangeri	76.73	0.00e+00	689.00
IUUC-Ttr-129267	Tursiops truncatus	81.17	0.00e+00	811.00
IUUC-Vpa-130823	Vicugna pacos	74.32	2.00e-160	558.00
IUUC-Xtr-131768	Xenopus tropicalis	56.78	1.00e-158	553.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence