iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099136

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ubiquitinyl hydrolase 1

Genbank Nucleotide ID

CM000353

Gene Name

POPTRDRAFT_778299; POPTR_0017s08270g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0017s08270	POPTR_0017s08270.1	POPTR_0017s08270.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	1.80e-80	271.8	233	907

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 2    GlkNlgNtCYmNSvLQcLsnipelrelllekkkeklneenpkepkgellkslqklfeelw..kskkkavsprellkalkkeaeefsgyeqq 90
           Gl NlgNtC++NSv+Q L+++++lr++l+e           + + g+l+ +l+klf+ l+   s +++++p++++ +++++a++f+gy+qq
   Q: 233  GLVNLGNTCFFNSVMQNLLSMNKLRDYLNE-----------EASLGPLSIALKKLFTDLQaeASLRNVINPKSFFGSVCSKAPQFRGYQQQ 312
           9*****************************...........345689************999999************************** PP
   S: 91   DaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssreepfldlslpvpgkee 181
           D++E+l++lld+l++e       +         ++  ++++  ++k+++++++  F+g+++s++ c ec+++s  +epfldlslpvp+k+ 
   Q: 313  DSHELLCCLLDGLSTEELI--VRK---------RRNASKEDGIPPKHGPTFVDSAFGGRISSTVCCVECGHSSIMHEPFLDLSLPVPMKKP 392
           **************99811..111.........12223345679999*******************************************8 PP
   S: 182  tkke....................................................................................... 185
             k+                                                                                       
   Q: 393  PIKKvqpvsrakktklppkrggkvqpkvnknmdsvpaqnisnpsvhsesscqtqsssdntlapdstvpstaqavettmeqtassfedfwmd 483
           77779************************************************************************************** PP
   S: 186  ........................................................................................... 185
                                                                                                      
   Q: 484  yvgpettsdehdltsenndlaagwqcgdkfdipndglmetcqassidgepnqkpesssvnpweeevpfqvqssevlllpyreegytdgeim 574
           ******************************************************************************************* PP
   S: 186  .......................................................................slqdcLesftkeeelegenk 205
                                                                                  s+++cL++f+k+e l ++n+
   Q: 575  kgeaeasssfvgceqdeaefdgigdlfnepevsaapvagpslpnevagpvfiagigsesdpdevddtdspvSIESCLSHFVKPELLSNDNA 665
           ******************************************************************************************* PP
   S: 206  yycekck.................................................................................... 212
           ++ce+c                                                                                     
   Q: 666  WECENCSkilqqqrldakkkqakissktllnggndssnkkfiqaeivqtemepfisqseerkyemnvshssgyyescngetlsgppvdscs 756
           ***************************************************************************************9999 PP
   S: 213  ...................kkqeaekklklkklPevLilhLkRfsfseeqksrekinkkvefpleLdlspfctspeekqkekkkYeLiavv 284
                               k++a+k++ ++k P++L++hLkRfs + + ++  k++ +v+f + Ldl p++  ++ +  e++ Y+L++vv
   Q: 757  vdetrdvnededktskklnVKRDATKRVLIDKAPPILTIHLKRFSQDAR-GRLCKLSGHVTFRDVLDLGPYMDPRCVDT-ERYVYRLLGVV 845
           99999999999999988888888*********************77665.8889********************99776.6********** PP
   S: 285  vHsGslssGHYvayvkn........ekgk......WllfdDskVtevkeeevleetgstaYvlfYkr 337
            H G++++GHY+ayv+         +  k      W++ +D +V+ev+ eevl+   ++aY+lfY++
   Q: 846  EHLGTMRGGHYIAYVRGdernkgkaD--KeqggsvWYYASDAHVREVSLEEVLR---CDAYLLFYEK 907
           ****************9666555551..045679********************...********97 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MGKRANKKKA RPPQKEKRVA GHSPNIVPEQ ANPNVEIVDG VTAVKERKLC SHFDKGFDAN 60
KLSDKIRSLD SLRCEDCREG VGDRKGAKGR GKQAKKKGSG SVDSKSQSKA IWVCLECGHL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGGGAAAA GGGCTAATAA GAAAAAGGCT CGCCCACCGC AGAAGGAGAA GCGGGTCGCT 60
GGCCATTCTC CCAATATTGT GCCTGAACAA GCAAATCCCA ATGTTGAAAT TGTTGACGGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0479--Metal-binding
KW-0645--Protease
KW-1185--Reference proteome
KW-0788--Thiol protease
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001394--Peptidase_C19_UCH
IPR018200--USP_CS
IPR028889--USP_dom
IPR013083--Znf_RING/FYVE/PHD
IPR001607--Znf_UBP

PROSITE

PS00972--USP_1
PS00973--USP_2
PS50235--USP_3
PS50271--ZF_UBP

Pfam

PF00443--UCH
PF02148--zf-UBP

SMART

SM00290--ZnF_UBP

Gene Ontology

GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0008270--F:zinc ion binding
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0017s08270g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001931	Ailuropoda melanoleuca	30.57	4.00e-41	162.00
IUUC-Atr-003015	Amborella trichopoda	36.59	2.00e-142	499.00
IUUC-Apl-004145	Anas platyrhynchos	31.38	1.00e-43	170.00
IUUC-Aca-004314	Anolis carolinensis	30.75	3.00e-39	156.00
IUUC-Aly-005494	Arabidopsis lyrata	46.67	0.00e+00	686.00
IUUC-Ath-007211	Arabidopsis thaliana	45.69	0.00e+00	668.00
IUUC-Ame-011659	Astyanax mexicanus	41.06	3.00e-27	116.00
IUUC-Bta-013362	Bos taurus	30.23	5.00e-41	162.00
IUUC-Bdi-014465	Brachypodium distachyon	30.15	3.00e-65	243.00
IUUC-Bol-015853	Brassica oleracea	44.97	1.00e-119	424.00
IUUC-Bra-017226	Brassica rapa	44.48	2.00e-175	609.00
IUUC-Cja-019177	Callithrix jacchus	29.90	3.00e-40	160.00
IUUC-Cfa-020051	Canis familiaris	30.57	1.00e-41	164.00
IUUC-Cpo-021886	Cavia porcellus	30.28	9.00e-44	171.00
IUUC-Csa-024103	Chlorocebus sabaeus	29.90	1.00e-39	157.00
IUUC-Cho-024315	Choloepus hoffmanni	39.23	3.00e-20	93.60
IUUC-Cme-027348	Cyanidioschyzon merolae	38.13	1.00e-20	94.40
IUUC-Dre-028388	Danio rerio	29.53	3.00e-34	140.00
IUUC-Dno-029409	Dasypus novemcinctus	30.49	9.00e-43	168.00
IUUC-Dme-031870	Drosophila melanogaster	31.22	9.00e-16	79.00
IUUC-Ete-032807	Echinops telfairi	27.02	1.00e-28	120.00
IUUC-Eca-033479	Equus caballus	30.49	5.00e-41	162.00
IUUC-Fca-036320	Felis catus	30.65	1.00e-40	160.00
IUUC-Fal-037029	Ficedula albicollis	31.02	4.00e-43	169.00
IUUC-Gmo-039480	Gadus morhua	28.74	3.00e-36	146.00
IUUC-Gga-040527	Gallus gallus	32.18	2.00e-43	170.00
IUUC-Gac-042343	Gasterosteus aculeatus	29.06	7.00e-38	152.00
IUUC-Gma-044402	Glycine max	50.61	0.00e+00	867.00
IUUC-Ggo-045598	Gorilla gorilla	29.64	8.00e-39	155.00
IUUC-Hsa-046598	Homo sapiens	29.64	5.00e-39	155.00
IUUC-Itr-047951	Ictidomys tridecemlineatus	30.23	7.00e-42	165.00
IUUC-Loc-051814	Lepisosteus oculatus	29.13	5.00e-39	155.00
IUUC-Laf-053732	Loxodonta africana	30.51	9.00e-43	168.00
IUUC-Mcc-054661	Macaca mulatta	29.90	1.00e-39	157.00
IUUC-Meu-055967	Macropus eugenii	28.46	1.00e-32	134.00
IUUC-Mga-059551	Meleagris gallopavo	31.55	3.00e-46	179.00
IUUC-Mvi-060391	Microbotryum violaceum	32.95	2.00e-18	87.40
IUUC-Mmr-061747	Microcebus murinus	30.23	2.00e-40	160.00
IUUC-Mdo-062220	Monodelphis domestica	31.36	2.00e-41	163.00
IUUC-Mmu-063582	Mus musculus	29.65	3.00e-40	159.00
IUUC-Mac-064941	Musa acuminata	35.63	7.00e-116	410.00
IUUC-Mpu-066339	Mustela putorius furo	30.31	7.00e-42	165.00
IUUC-Mlu-067511	Myotis lucifugus	30.49	5.00e-41	162.00
IUUC-Nle-069252	Nomascus leucogenys	30.15	9.00e-40	158.00
IUUC-Opr-070969	Ochotona princeps	31.44	6.00e-41	162.00
IUUC-Ont-071786	Oreochromis niloticus	29.98	4.00e-39	156.00
IUUC-Ocu-074704	Oryctolagus cuniculus	29.95	7.00e-40	159.00
IUUC-Oga-088713	Otolemur garnettii	29.19	5.00e-40	159.00
IUUC-Oar-089887	Ovis aries	29.64	1.00e-39	157.00
IUUC-Ptr-091670	Pan troglodytes	29.64	2.00e-38	153.00
IUUC-Pan-092293	Papio anubis	29.90	1.00e-39	157.00
IUUC-Psi-093101	Pelodiscus sinensis	30.18	3.00e-41	162.00
IUUC-Ppa-095622	Physcomitrella patens	34.21	5.00e-52	199.00
IUUC-Pfo-097202	Poecilia formosa	30.09	1.00e-38	154.00
IUUC-Ppe-101794	Prunus persica	52.80	0.00e+00	772.00
IUUC-Rno-105237	Rattus norvegicus	29.72	1.00e-40	160.00
IUUC-Sha-106889	Sarcophilus harrisii	31.28	1.00e-39	157.00
IUUC-Sja-107712	Schizosaccharomyces japonicus	34.44	3.00e-18	86.70
IUUC-Spo-108149	Schizosaccharomyces pombe	37.89	1.00e-23	104.00
IUUC-Stu-112499	Solanum tuberosum	44.09	0.00e+00	759.00
IUUC-Sar-113530	Sorex araneus	31.58	7.00e-41	162.00
IUUC-Ssc-116091	Sus scrofa	29.49	7.00e-40	158.00
IUUC-Tgu-117478	Taeniopygia guttata	31.35	1.00e-41	164.00
IUUC-Ttr-128271	Tursiops truncatus	29.90	5.00e-41	162.00
IUUC-Vpa-130674	Vicugna pacos	29.90	1.00e-40	161.00
IUUC-Xtr-131869	Xenopus tropicalis	30.33	2.00e-44	173.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence