iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006961

UUCD1 version

UUC-ArT-00265

Ensembl Protein ID

AT2G40830.1

UniProt Accession

O22197; RHC1A_ARATH

Genbank Protein ID

AAC69854.1; AAB86443.1; AEC09886.1; AEC09887.1; AEC09888.1; ANM62005.1; AAM98130.1; AAP42739.1

Protein Name

Probable E3 ubiquitin-protein ligase RHC1A; RING-H2 finger C1a; RING-H2 zinc finger protein RHC1a; RING-type E3 ubiquitin transferase RHC1A

Genbank Nucleotide ID

AF079180; AC002409; CP002685; CP002685; CP002685; CP002685; AY139987; BT008726

Gene Name

RHC1A; At2g40830

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT2G40830	AT2G40830.1	AT2G40830.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	2.80e-07	31.8	190	231

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf...kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C++C+++f   ++  + +pC+H++h dC+  w        ++ +CP+Cr
   Q: 190  CPVCKDEFelgSE-AKQMPCNHIYHSDCIVPW------LVQHNSCPVCR 231
           ********77544.889***************......**********8 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro.

Protein Sequence
(Fasta)

MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT 60
FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA PLLIFGGQVP YRLTGDNAVE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGACAAGTAA AAAACACGTG GCATATATTG TGCGTTCGTA GAGACTGTAA TAAAGACGGA 60
GAGATTCTTC TAGAGTCAGT TCTTCTTCTT CATCCTCTTC TTCCCCCCAA ATCCTCTCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0007--Acetylation
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005618--C:cell wall
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0000209--P:protein polyubiquitination
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

ath:AT2G40830

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000551	Aegilops tauschii	49.61	4.00e-57	213.00
IUUC-Aml-002035	Ailuropoda melanoleuca	30.12	6.00e-26	110.00
IUUC-Atr-002522	Amborella trichopoda	58.43	1.00e-45	174.00
IUUC-Aly-006495	Arabidopsis lyrata	94.85	1.00e-138	485.00
IUUC-Ame-010626	Astyanax mexicanus	30.15	2.00e-26	112.00
IUUC-Bdi-014137	Brachypodium distachyon	48.76	5.00e-66	243.00
IUUC-Bol-016039	Brassica oleracea	75.75	3.00e-118	417.00
IUUC-Bra-017780	Brassica rapa	80.30	2.00e-122	431.00
IUUC-Cfa-020882	Canis familiaris	30.12	7.00e-26	110.00
IUUC-Cne-026837	Cryptococcus neoformans	38.41	3.00e-20	92.80
IUUC-Dre-027400	Danio rerio	41.09	8.00e-26	110.00
IUUC-Dno-029349	Dasypus novemcinctus	47.62	7.00e-26	110.00
IUUC-Dse-031376	Dothistroma septosporum	38.89	3.00e-16	79.30
IUUC-Fca-036192	Felis catus	29.79	4.00e-26	111.00
IUUC-Gac-041369	Gasterosteus aculeatus	38.41	2.00e-27	115.00
IUUC-Gma-043643	Glycine max	57.32	2.00e-89	321.00
IUUC-Hvu-047602	Hordeum vulgare	48.76	5.00e-62	230.00
IUUC-Lch-050673	Latimeria chalumnae	32.21	2.00e-27	115.00
IUUC-Lpe-051427	Leersia perrieri	49.62	2.00e-57	214.00
IUUC-Loc-052470	Lepisosteus oculatus	47.52	1.00e-23	102.00
IUUC-Laf-054384	Loxodonta africana	29.62	3.00e-24	104.00
IUUC-Mtr-057711	Medicago truncatula	43.43	1.00e-63	235.00
IUUC-Mmu-064196	Mus musculus	30.50	3.00e-27	114.00
IUUC-Mac-064627	Musa acuminata	41.72	8.00e-58	216.00
IUUC-Mpu-066575	Mustela putorius furo	30.12	4.00e-26	111.00
IUUC-Ont-071505	Oreochromis niloticus	29.96	1.00e-27	116.00
IUUC-Ocu-074691	Oryctolagus cuniculus	30.12	6.00e-26	110.00
IUUC-Oba-075047	Oryza barthii	50.18	8.00e-65	239.00
IUUC-Obr-076829	Oryza brachyantha	47.92	2.00e-62	231.00
IUUC-Ogl-077378	Oryza glaberrima	49.82	4.00e-64	237.00
IUUC-Ogu-078709	Oryza glumaepatula	50.00	6.00e-65	239.00
IUUC-Oin-079400	Oryza indica	40.16	4.00e-38	150.00
IUUC-Olo-080762	Oryza longistaminata	50.18	8.00e-65	239.00
IUUC-Ome-081717	Oryza meridionalis	38.60	1.00e-56	213.00
IUUC-Oni-083090	Oryza nivara	50.00	6.00e-65	239.00
IUUC-Opu-083898	Oryza punctata	50.18	1.00e-64	239.00
IUUC-Oru-084267	Oryza rufipogon	50.00	4.00e-65	240.00
IUUC-Osa-086229	Oryza sativa	50.00	6.00e-65	239.00
IUUC-Psi-093171	Pelodiscus sinensis	40.71	3.00e-26	111.00
IUUC-Pfo-097402	Poecilia formosa	30.60	4.00e-29	121.00
IUUC-Pop-099462	Populus trichocarpa	57.01	5.00e-88	316.00
IUUC-Ppe-101324	Prunus persica	53.39	1.00e-80	292.00
IUUC-Pva-102881	Pteropus vampyrus	30.00	4.00e-27	114.00
IUUC-Rno-104914	Rattus norvegicus	30.50	4.00e-27	114.00
IUUC-Sit-110648	Setaria italica	51.41	4.00e-66	243.00
IUUC-Sly-111407	Solanum lycopersicum	49.68	2.00e-69	255.00
IUUC-Stu-112467	Solanum tuberosum	50.64	9.00e-70	256.00
IUUC-Sbi-114297	Sorghum bicolor	51.06	2.00e-65	241.00
IUUC-Ssc-115917	Sus scrofa	32.69	4.00e-28	117.00
IUUC-Tru-117681	Takifugu rubripes	30.37	1.00e-26	113.00
IUUC-Tni-120092	Tetraodon nigroviridis	29.73	3.00e-27	114.00
IUUC-Tca-121480	Theobroma cacao	60.06	9.00e-95	339.00
IUUC-Tae-124133	Triticum aestivum	49.12	7.00e-64	236.00
IUUC-Tur-125986	Triticum urartu	43.31	1.00e-51	196.00
IUUC-Tbe-127794	Tupaia belangeri	46.03	1.00e-15	75.90
IUUC-Uma-129414	Ustilago maydis	37.61	2.00e-16	80.50
IUUC-Vvi-131335	Vitis vinifera	54.85	2.00e-83	301.00
IUUC-Xtr-132815	Xenopus tropicalis	30.48	3.00e-30	125.00
IUUC-Xma-133481	Xiphophorus maculatus	30.60	3.00e-29	121.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence