iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Hvu-047301

Ensembl Protein ID

MLOC_54479.1

UniProt Accession

Q9ARL8; Q9ARL8_HORVV

Genbank Protein ID

AAG49000.1

Protein Name

Putative cleavage stimulation factor subunit 1

Genbank Nucleotide ID

AY013246

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
MLOC_54479	MLOC_54479.1	MLOC_54479.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.00e-26	92.0	118	151
UBD/Beta-Prp	1.40e-52	179.8	116	382

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtg 33
           H++  +c +f +d +++++Gs+D +ik +++++ 
   Q: 118  HKNVARCAKFsPDgKHFATGSGDTSIKFFEVSKI 151
           99999******999**************998765 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkfspdksllatgsrdgtikvwdvttgkl..............lrslsgheaevtavkfspdgkilvtgseDrtikvwdls...tgkc 86
           ++hk+v +c kfspd++++atgs d +ik ++v++ k               +r++++h +++++++f+p ++il+++++D+tik +++s   ++k 
   Q: 116  SDHKNVARCAKFSPDGKHFATGSGDTSIKFFEVSKIKQtmlgdskegpgrpvVRTFYDHVQPINDLDFHPISPILISAAKDNTIKFFEFSktaARKA 212
           5799******************************999899***********************************************8885558888 PP
   S: 87   vhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqclee.tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtds 182
           +++++  +++v+s+ f+p gd++++G+++ +++++d++t +c+ +   +  ++++n v+++++g+++v++s+D+ +r+Wd  +++++r   g  ++s
   Q: 213  FRVIQ-DTHNVRSVCFHPCGDYILAGTDHPVAHLYDVNTFTCFLSaNPQDSSAAINQVRYSGTGSMYVTASKDGSLRIWDGVSAECVRPIIG-AHGS 307
           88888.*************************************98777788899*************************************9.6777 PP
   S: 183  vysls..fdsngkelvsgsldgtvklwdlqtgecvrtlng.htdnvksvrfs.pnderlvsgs.sDgsiriWdlr 252
           v+ +s  f+++ ++++s ++d+ +klw++ tg+ v+++ g  ++++++ +++ + +e+++s+  + + + +Wd  
   Q: 308  VEATSaiFTKDERYILSSGKDSCIKLWEVGTGRLVKQYPGvVNTQFRCQAVFnETEEFVLSTDeQNNEVVVWDAL 382
           7666667*********************************65677888887724555555554556677779965 PP

Organism

Hordeum vulgare

Protein Sequence
(Fasta)

MDAAVQEAKL LRQVNALIVA HLRDQNLTQA AAAVAAATMT PKADASLPNH LLRLVAKGLA 60
AEREEAARGG GAPPAFDSAG GGGLARPLGT SAVDFSVQNV RGPSKTFPKH ETRHISDHKN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTGGTGCCCA GATGCTGACA ACACACGTAT TTTCACCTTC GTTCAGAGGT TCACTCTGCT 60
GCGAGAACAC TGAACAAATT TGCTCTGAAG CTTGAGTCCA CTCCCACTCC ATTTCACAGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002163	Ailuropoda melanoleuca	43.92	1.00e-81	295.00
IUUC-Atr-002687	Amborella trichopoda	58.57	6.00e-160	555.00
IUUC-Apl-003438	Anas platyrhynchos	40.05	3.00e-82	297.00
IUUC-Aca-005178	Anolis carolinensis	44.21	3.00e-82	297.00
IUUC-Aly-005791	Arabidopsis lyrata	61.41	3.00e-155	540.00
IUUC-Ath-006689	Arabidopsis thaliana	61.65	1.00e-154	538.00
IUUC-Ame-011217	Astyanax mexicanus	45.32	1.00e-70	258.00
IUUC-Bta-012619	Bos taurus	40.05	1.00e-81	295.00
IUUC-Bdi-014515	Brachypodium distachyon	83.45	0.00e+00	702.00
IUUC-Bra-017450	Brassica rapa	55.07	3.00e-140	489.00
IUUC-Cel-018151	Caenorhabditis elegans	39.06	3.00e-71	260.00
IUUC-Cja-019304	Callithrix jacchus	43.92	7.00e-82	296.00
IUUC-Cfa-020208	Canis familiaris	43.92	1.00e-81	295.00
IUUC-Cpo-022245	Cavia porcellus	43.92	1.00e-81	295.00
IUUC-Csa-023066	Chlorocebus sabaeus	43.92	7.00e-82	296.00
IUUC-Cho-024770	Choloepus hoffmanni	43.92	2.00e-81	294.00
IUUC-Cin-025621	Ciona intestinalis	34.23	2.00e-70	258.00
IUUC-Csv-026071	Ciona savignyi	39.43	1.00e-77	282.00
IUUC-Dre-028254	Danio rerio	42.14	6.00e-78	283.00
IUUC-Dno-029903	Dasypus novemcinctus	43.92	1.00e-81	295.00
IUUC-Dor-030423	Dipodomys ordii	43.92	1.00e-81	295.00
IUUC-Dme-031993	Drosophila melanogaster	40.92	1.00e-70	258.00
IUUC-Eca-033316	Equus caballus	43.92	1.00e-81	295.00
IUUC-Eeu-035001	Erinaceus europaeus	43.03	2.00e-79	288.00
IUUC-Fca-036447	Felis catus	43.92	1.00e-81	295.00
IUUC-Fal-037601	Ficedula albicollis	40.05	3.00e-82	297.00
IUUC-Gmo-038531	Gadus morhua	41.12	4.00e-75	273.00
IUUC-Gga-040869	Gallus gallus	40.05	4.00e-82	297.00
IUUC-Gac-042380	Gasterosteus aculeatus	40.26	1.00e-79	288.00
IUUC-Gma-043478	Glycine max	65.96	8.00e-169	585.00
IUUC-Ggo-045302	Gorilla gorilla	43.92	7.00e-82	296.00
IUUC-Hsa-045678	Homo sapiens	43.92	7.00e-82	296.00
IUUC-Itr-048259	Ictidomys tridecemlineatus	43.92	1.00e-81	295.00
IUUC-Lch-050319	Latimeria chalumnae	43.62	7.00e-82	296.00
IUUC-Lpe-051440	Leersia perrieri	66.14	2.00e-174	604.00
IUUC-Loc-052035	Lepisosteus oculatus	39.75	3.00e-80	290.00
IUUC-Laf-054275	Loxodonta africana	43.92	1.00e-81	295.00
IUUC-Mcc-055857	Macaca mulatta	38.76	7.00e-61	226.00
IUUC-Mtr-058667	Medicago truncatula	63.68	6.00e-162	562.00
IUUC-Mga-059710	Meleagris gallopavo	40.05	4.00e-82	297.00
IUUC-Mmr-060604	Microcebus murinus	43.92	1.00e-81	295.00
IUUC-Mdo-062953	Monodelphis domestica	40.05	1.00e-81	295.00
IUUC-Mmu-064292	Mus musculus	43.62	2.00e-81	295.00
IUUC-Mac-064568	Musa acuminata	75.84	3.00e-154	536.00
IUUC-Mpu-066294	Mustela putorius furo	47.69	3.00e-55	207.00
IUUC-Mlu-067279	Myotis lucifugus	40.95	4.00e-83	300.00
IUUC-Nle-069322	Nomascus leucogenys	43.92	7.00e-82	296.00
IUUC-Opr-070580	Ochotona princeps	40.05	2.00e-81	295.00
IUUC-Ont-072554	Oreochromis niloticus	43.32	2.00e-80	291.00
IUUC-Oan-072856	Ornithorhynchus anatinus	40.30	4.00e-82	297.00
IUUC-Ocu-074150	Oryctolagus cuniculus	44.62	4.00e-65	240.00
IUUC-Oba-075585	Oryza barthii	74.45	0.00e+00	640.00
IUUC-Obr-076069	Oryza brachyantha	80.18	0.00e+00	671.00
IUUC-Ogl-077045	Oryza glaberrima	82.37	0.00e+00	697.00
IUUC-Ogu-078697	Oryza glumaepatula	81.99	0.00e+00	673.00
IUUC-Oin-080119	Oryza indica	82.37	0.00e+00	697.00
IUUC-Olo-081093	Oryza longistaminata	62.89	1.00e-110	393.00
IUUC-Ome-081718	Oryza meridionalis	71.69	4.00e-164	570.00
IUUC-Oni-082072	Oryza nivara	74.45	0.00e+00	640.00
IUUC-Opu-084080	Oryza punctata	71.56	3.00e-157	546.00
IUUC-Oru-085070	Oryza rufipogon	77.40	0.00e+00	639.00
IUUC-Osa-086149	Oryza sativa	82.37	0.00e+00	697.00
IUUC-Ola-086697	Oryzias latipes	42.43	2.00e-79	288.00
IUUC-Oga-088697	Otolemur garnettii	43.92	1.00e-81	295.00
IUUC-Oar-089774	Ovis aries	43.92	2.00e-81	295.00
IUUC-Ptr-090924	Pan troglodytes	43.92	7.00e-82	296.00
IUUC-Pan-092373	Papio anubis	43.92	8.00e-82	296.00
IUUC-Psi-094001	Pelodiscus sinensis	43.92	6.00e-82	296.00
IUUC-Pma-094274	Petromyzon marinus	38.50	2.00e-74	271.00
IUUC-Ppa-095562	Physcomitrella patens	63.55	4.00e-158	549.00
IUUC-Pfo-097235	Poecilia formosa	43.32	9.00e-80	289.00
IUUC-Pab-098608	Pongo abelii	43.92	7.00e-82	296.00
IUUC-Pca-100268	Procavia capensis	40.05	1.00e-81	295.00
IUUC-Ppe-101425	Prunus persica	66.59	1.00e-169	587.00
IUUC-Pva-103183	Pteropus vampyrus	43.92	1.00e-81	295.00
IUUC-Rno-105097	Rattus norvegicus	43.62	2.00e-81	295.00
IUUC-Sha-107642	Sarcophilus harrisii	40.05	1.00e-81	295.00
IUUC-Smo-108680	Selaginella moellendorffii	59.48	7.00e-141	492.00
IUUC-Sit-110471	Setaria italica	82.59	0.00e+00	695.00
IUUC-Sly-111143	Solanum lycopersicum	61.16	3.00e-80	290.00
IUUC-Stu-111926	Solanum tuberosum	73.75	2.00e-70	256.00
IUUC-Sar-112947	Sorex araneus	44.75	6.00e-65	239.00
IUUC-Sbi-113769	Sorghum bicolor	81.65	0.00e+00	677.00
IUUC-Ssc-115736	Sus scrofa	43.92	1.00e-81	295.00
IUUC-Tgu-117457	Taeniopygia guttata	40.05	3.00e-82	297.00
IUUC-Tru-117760	Takifugu rubripes	43.03	1.00e-80	291.00
IUUC-Tsy-118943	Tarsius syrichta	43.92	1.00e-78	285.00
IUUC-Tni-120081	Tetraodon nigroviridis	43.03	1.00e-80	291.00
IUUC-Tca-121190	Theobroma cacao	68.53	2.00e-175	607.00
IUUC-Tae-125535	Triticum aestivum	94.60	0.00e+00	744.00
IUUC-Tur-126329	Triticum urartu	95.50	0.00e+00	679.00
IUUC-Tbe-127878	Tupaia belangeri	43.62	2.00e-80	291.00
IUUC-Ttr-128985	Tursiops truncatus	43.92	1.00e-81	295.00
IUUC-Vpa-130147	Vicugna pacos	43.92	2.00e-81	295.00
IUUC-Vvi-130935	Vitis vinifera	67.67	2.00e-173	600.00
IUUC-Xtr-132482	Xenopus tropicalis	43.62	2.00e-81	295.00
IUUC-Xma-133929	Xiphophorus maculatus	43.32	9.00e-80	289.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence