iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tca-121653

Ensembl Protein ID

EOY17408

UniProt Accession

A0A061FKH0; A0A061FKH0_THECC

Genbank Protein ID

EOY17408.1

Protein Name

Transducin family protein / WD-40 repeat family protein isoform 2

Genbank Nucleotide ID

CM001886

Gene Name

TCM_036573

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_036573	EOY17408	EOY17408
TCM_036573	EOY17407	EOY17407
TCM_036573	EOY17409	EOY17409

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.30e-31	106.3	262	299
UBD/Beta-Prp	7.00e-49	167.5	216	512

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           H d+v c++f  d  +++sGs Dg+ikvW++rtg +l+
   Q: 262  HDDPVLCVDFsRDsEMIASGSQDGKIKVWRIRTGQCLR 299
           99*********777*********************986 PP

UBD/Beta-Prp

   S: 13   itcvkfspdksllatgsrdgtikvwdvttgkl........lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlk.ghedsvlslsfsp 104
             c  fspd+++l+++s dg i+vwd+ +gkl         +++  h+++v +v+fs+d++++++gs+D+ ikvw ++tg+c++ l+ +h++ v+sl fs+
   Q: 216  AECARFSPDGQFLVSSSVDGFIEVWDYISGKLkkdlqyqaDETFMMHDDPVLCVDFSRDSEMIASGSQDGKIKVWRIRTGQCLRRLErAHSQGVTSLVFSR 316
           57999***************************888888877788889999************************************989************ PP
   S: 105  sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtl......tgghtdsvysls.fdsngkelvsg 198
           +g+ l+s+s d+t+r+  l++g+ l+  ++gh++ vn + +  dg+ ++++s D tv++Wd+kt ++l+t+      +g  + sv+s+  f +n  +++ +
   Q: 317  DGSQLLSTSFDSTARIHGLKSGKLLK-EFRGHTSYVNDAIFTADGSRIITASSDCTVKVWDVKTTDCLQTFkpppplRG-GDASVNSVHlFPKNTDHIIVC 415
           **************************.*************************************************777.99*******999999****** PP
   S: 199  sldgtvklwdlqtgecvrtlnghtdnvksvrfs...pnderlvsgssD.gsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwk 293
            + +++ +  lq g++v+++   ++   + ++    p++e+++++++D +  +++ +++g+l + l+ h++ vi +++ ++ +n +++ +ed++ ++wk
   Q: 416  NKTSSIYIMTLQ-GQVVKSFSSGKKEGGDFAAAcvsPKGEWIYCVGEDsRNMYCFSYQTGKLEHLLTVHEKDVIGITH-HPHRNLVATYAEDCTMKLWK 512
           ***********5.66888887766444444433355**********882456789***********************.*******************8 PP

Organism

Theobroma cacao

Protein Sequence
(Fasta)

MTLEIEARDV IKIVLQFCKE NSLHQTFQTL QNECQVSLNT VDSIETFVAD VNSGRWDAIL 60
PQVAQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT QAMGVMKQEQ PERYLRLEHL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCAGAAACT AGGCAGTGTC TAACCCAAAC CCAAAACCCC CCGAACAGAC TGAACCCTAG 60
CTCCTAGAGA ACCTGGTCCA AACAAAAATA GCAAAACCGA GGAGGGCCTT CCTTTCTAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR006595--CTLH_C
IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0008380--P:RNA splicing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000857	Aegilops tauschii	90.58	4.00e-74	269.00
IUUC-Aml-001330	Ailuropoda melanoleuca	66.28	0.00e+00	712.00
IUUC-Atr-002570	Amborella trichopoda	88.06	0.00e+00	937.00
IUUC-Apl-003826	Anas platyrhynchos	67.00	0.00e+00	685.00
IUUC-Aca-005183	Anolis carolinensis	66.02	0.00e+00	706.00
IUUC-Aly-005632	Arabidopsis lyrata	87.30	0.00e+00	947.00
IUUC-Ath-007219	Arabidopsis thaliana	86.91	0.00e+00	939.00
IUUC-Ame-011374	Astyanax mexicanus	65.69	0.00e+00	708.00
IUUC-Bta-012890	Bos taurus	66.28	0.00e+00	712.00
IUUC-Bdi-014061	Brachypodium distachyon	85.52	0.00e+00	925.00
IUUC-Bol-016332	Brassica oleracea	86.35	0.00e+00	942.00
IUUC-Bra-017612	Brassica rapa	86.33	0.00e+00	938.00
IUUC-Cel-018238	Caenorhabditis elegans	51.86	4.00e-160	556.00
IUUC-Cja-019336	Callithrix jacchus	66.28	0.00e+00	712.00
IUUC-Cfa-021108	Canis familiaris	66.08	0.00e+00	711.00
IUUC-Cpo-022052	Cavia porcellus	66.28	0.00e+00	712.00
IUUC-Cre-022595	Chlamydomonas reinhardtii	65.56	0.00e+00	718.00
IUUC-Csa-023488	Chlorocebus sabaeus	66.28	0.00e+00	712.00
IUUC-Cho-025010	Choloepus hoffmanni	58.09	2.00e-179	621.00
IUUC-Cin-025251	Ciona intestinalis	63.18	0.00e+00	689.00
IUUC-Csv-026092	Ciona savignyi	59.59	0.00e+00	627.00
IUUC-Dre-027382	Danio rerio	65.11	0.00e+00	701.00
IUUC-Dno-029007	Dasypus novemcinctus	66.47	0.00e+00	712.00
IUUC-Dor-030180	Dipodomys ordii	56.98	1.00e-123	435.00
IUUC-Dme-031762	Drosophila melanogaster	60.82	0.00e+00	674.00
IUUC-Ete-032933	Echinops telfairi	65.12	1.00e-168	584.00
IUUC-Eca-033864	Equus caballus	66.47	0.00e+00	701.00
IUUC-Eeu-034635	Erinaceus europaeus	60.10	9.00e-146	509.00
IUUC-Fca-036119	Felis catus	66.28	0.00e+00	712.00
IUUC-Fal-037396	Ficedula albicollis	67.13	0.00e+00	696.00
IUUC-Gmo-038962	Gadus morhua	64.91	0.00e+00	698.00
IUUC-Gga-040134	Gallus gallus	66.67	0.00e+00	714.00
IUUC-Gac-041630	Gasterosteus aculeatus	64.52	0.00e+00	698.00
IUUC-Gma-043928	Glycine max	92.56	0.00e+00	984.00
IUUC-Ggo-045061	Gorilla gorilla	66.02	0.00e+00	707.00
IUUC-Hsa-046215	Homo sapiens	66.28	0.00e+00	712.00
IUUC-Hvu-047799	Hordeum vulgare	86.15	0.00e+00	647.00
IUUC-Itr-048826	Ictidomys tridecemlineatus	66.28	0.00e+00	712.00
IUUC-Lch-050209	Latimeria chalumnae	61.28	0.00e+00	644.00
IUUC-Lpe-050740	Leersia perrieri	87.87	0.00e+00	944.00
IUUC-Loc-052739	Lepisosteus oculatus	61.85	0.00e+00	650.00
IUUC-Laf-053895	Loxodonta africana	66.15	0.00e+00	707.00
IUUC-Mcc-055183	Macaca mulatta	66.28	0.00e+00	712.00
IUUC-Mtr-057730	Medicago truncatula	90.41	0.00e+00	963.00
IUUC-Mga-059222	Meleagris gallopavo	67.70	2.00e-169	587.00
IUUC-Mmr-061749	Microcebus murinus	66.47	0.00e+00	701.00
IUUC-Mdo-062920	Monodelphis domestica	66.08	0.00e+00	711.00
IUUC-Mmu-063228	Mus musculus	66.28	0.00e+00	712.00
IUUC-Mac-065084	Musa acuminata	90.02	0.00e+00	960.00
IUUC-Mpu-066162	Mustela putorius furo	66.28	0.00e+00	712.00
IUUC-Mlu-067471	Myotis lucifugus	65.30	0.00e+00	704.00
IUUC-Nle-070129	Nomascus leucogenys	66.28	0.00e+00	712.00
IUUC-Opr-071176	Ochotona princeps	66.47	0.00e+00	701.00
IUUC-Ont-071830	Oreochromis niloticus	65.89	0.00e+00	709.00
IUUC-Oan-072778	Ornithorhynchus anatinus	66.47	0.00e+00	712.00
IUUC-Ocu-074570	Oryctolagus cuniculus	66.28	0.00e+00	712.00
IUUC-Oba-075507	Oryza barthii	88.26	0.00e+00	944.00
IUUC-Obr-076672	Oryza brachyantha	89.43	0.00e+00	958.00
IUUC-Ogl-077110	Oryza glaberrima	88.26	0.00e+00	944.00
IUUC-Ogu-077976	Oryza glumaepatula	88.26	0.00e+00	944.00
IUUC-Oin-079525	Oryza indica	88.26	0.00e+00	944.00
IUUC-Olo-080391	Oryza longistaminata	85.74	0.00e+00	936.00
IUUC-Oni-082778	Oryza nivara	88.26	0.00e+00	944.00
IUUC-Opu-083710	Oryza punctata	88.63	0.00e+00	945.00
IUUC-Oru-084250	Oryza rufipogon	88.26	0.00e+00	944.00
IUUC-Osa-085363	Oryza sativa	88.26	0.00e+00	944.00
IUUC-Ola-087092	Oryzias latipes	65.11	0.00e+00	704.00
IUUC-Olu-087753	Ostreococcus lucimarinus	53.79	5.00e-148	516.00
IUUC-Oga-088278	Otolemur garnettii	60.35	0.00e+00	633.00
IUUC-Oar-089664	Ovis aries	65.89	0.00e+00	706.00
IUUC-Ptr-090991	Pan troglodytes	66.28	0.00e+00	712.00
IUUC-Pan-092697	Papio anubis	66.28	0.00e+00	712.00
IUUC-Psi-093204	Pelodiscus sinensis	66.73	0.00e+00	694.00
IUUC-Ppa-095325	Physcomitrella patens	82.19	0.00e+00	897.00
IUUC-Pfo-096988	Poecilia formosa	65.50	0.00e+00	706.00
IUUC-Pab-098288	Pongo abelii	66.28	0.00e+00	712.00
IUUC-Pop-098787	Populus trichocarpa	91.41	0.00e+00	979.00
IUUC-Pca-100583	Procavia capensis	61.90	0.00e+00	632.00
IUUC-Ppe-101307	Prunus persica	89.82	0.00e+00	961.00
IUUC-Pva-102711	Pteropus vampyrus	66.28	0.00e+00	712.00
IUUC-Rno-105614	Rattus norvegicus	66.28	0.00e+00	712.00
IUUC-Sha-107017	Sarcophilus harrisii	66.28	0.00e+00	712.00
IUUC-Smo-108800	Selaginella moellendorffii	78.91	0.00e+00	834.00
IUUC-Sit-110278	Setaria italica	87.87	0.00e+00	933.00
IUUC-Sly-111777	Solanum lycopersicum	89.82	0.00e+00	958.00
IUUC-Stu-112293	Solanum tuberosum	90.22	0.00e+00	962.00
IUUC-Sar-112955	Sorex araneus	59.73	3.00e-178	617.00
IUUC-Sbi-114802	Sorghum bicolor	87.87	0.00e+00	926.00
IUUC-Ssc-116054	Sus scrofa	66.28	0.00e+00	712.00
IUUC-Tgu-116909	Taeniopygia guttata	66.54	0.00e+00	702.00
IUUC-Tru-118195	Takifugu rubripes	65.50	0.00e+00	709.00
IUUC-Tsy-119420	Tarsius syrichta	60.82	0.00e+00	628.00
IUUC-Tni-120416	Tetraodon nigroviridis	65.30	0.00e+00	703.00
IUUC-Tae-125609	Triticum aestivum	86.89	0.00e+00	933.00
IUUC-Tur-126197	Triticum urartu	85.36	0.00e+00	671.00
IUUC-Tbe-128009	Tupaia belangeri	66.27	2.00e-132	464.00
IUUC-Ttr-128719	Tursiops truncatus	59.65	0.00e+00	627.00
IUUC-Vpa-130579	Vicugna pacos	66.08	0.00e+00	705.00
IUUC-Vvi-131127	Vitis vinifera	92.37	0.00e+00	980.00
IUUC-Xtr-132950	Xenopus tropicalis	62.28	0.00e+00	653.00
IUUC-Xma-133537	Xiphophorus maculatus	65.50	0.00e+00	706.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence