iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099057

Ensembl Protein ID

POPTR_0015s12320.1

UniProt Accession

U5FMJ8; U5FMJ8_POPTR

Genbank Protein ID

ERP52388.1

Protein Name

Ubiquitin/ribosomal protein 27a

Genbank Nucleotide ID

CM000351

Gene Name

XM_002322281.1; POPTR_0015s12320g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0015s12320	POPTR_0015s12320.1	POPTR_0015s12320.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UBL/NEDD8	3.10e-41	140.6	1	76
ULD/UDP/UBQ/UBQ_PIM	8.10e-28	97.3	1	73

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UBL/NEDD8

   S: 1    mlikvktLtgkeieieieesdtierikerveekeGiPPsqqrliyaGkqleddktaadynlekgsvLhLvLaLrGG 76
           m+i+vktLtgk+i++e+e+sdt++++k+++++keGiPP+qqrli+aGkqled++t+adyn++k+s+LhLvL+LrGG
   Q: 1    MQIFVKTLTGKTITLEVESSDTVDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
           89*************************************************************************9 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkk 73
           m+++vktl+gk+++lev+++dtv ++K+ki+++ g+pp+qq+LI+aGk+L+D +tL +++i+++s++hlv++ 
   Q: 1    MQIFVKTLTGKTITLEVESSDTVDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73
           99********************************************************************986 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MQIFVKTLTG KTITLEVESS DTVDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN 60
IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKKKKVKL AVLQFYKVDD SGKVQRLRKE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGCCGAACCC TAACCCAGTC TTAAATCTTC CGCATCTGCT CTGCATCTCT GAAAGTAAAG 60
AAGCGAAGAT GCAGATCTTC GTGAAAACCT TGACGGGCAA GACAATAACC CTCGAGGTTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0689--Ribosomal protein

Interpro

IPR002906--Ribosomal_S27a
IPR011332--Ribosomal_zn-bd
IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom

PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2

Pfam

PF01599--Ribosomal_S27
PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM01402--Ribosomal_S27
SM00213--UBQ

Gene Ontology

GO:0005840--C:ribosome
GO:0003735--F:structural constituent of ribosome
GO:0006412--P:translation

KEGG

pop:POPTR_0015s12320g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003002	Amborella trichopoda	95.51	3.00e-71	259.00
IUUC-Xma-133747	Xiphophorus maculatus	82.35	2.00e-38	150.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence