iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007676

UUCD1 version

UUC-ArT-00115

Ensembl Protein ID

AT1G53490.1

UniProt Accession

F4HRI2; Q9C8L1; Q9LPG5; HEI10_ARATH

Genbank Protein ID

AAF78440.1; AAG51983.1; AEE32948.1

Protein Name

E3 ubiquitin-protein ligase CCNB1IP1 homolog; RING finger-containing protein HEI10; RING-type E3 ubiquitin transferase HEI10

Genbank Nucleotide ID

AC018748; AC024260; CP002684

Gene Name

HEI10; At1g53490; F22G10.16; T3F20.19

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G53490	AT1G53490.1	AT1G53490.1
AT1G53490	AT1G53490.2	AT1G53490.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	26.82	3.00e-14	76.30	IUUC-Mmu-063104

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Arabidopsis thaliana

Functional Description
(View)

Ubiquitin E3 ligase required for class I crossing-over (CO) formation during meiosis.

Protein Sequence
(Fasta)

MRCNACWRDL EGRAISTTCG HLLCTEDASK ILSNDGACPI CDQVLSKSLM KPVDINPNEE 60
WINMAMAGIS PQILMKSAYR SVMFYIAQRD LEMQYKMNRV VAQCRQKCEG MQAKFSEKME 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCACCAAAAT TCACCCAATG ACACGAAAAC ATTTCTAGCA CAAAGAAAAT CAAATCCTAT 60
CCTGAGATCC AATCCAATTC CAAGCTATTA GTCCCTCATG ATCCGAGTGT AGAACATGTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0158--Chromosome
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0469--Meiosis
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR013829--Hemagglutn_stalk
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

Pfam

PF14634--zf-RING_5

Gene Ontology

GO:0005712--C:chiasma
GO:0005694--C:chromosome
GO:0016740--F:transferase activity
GO:0008270--F:zinc ion binding
GO:0051026--P:chiasma assembly
GO:0007126--P:meiotic nuclear division
GO:0016567--P:protein ubiquitination
GO:0035825--P:reciprocal DNA recombination
GO:0007131--P:reciprocal meiotic recombination

KEGG

ath:AT1G53490

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001494	Ailuropoda melanoleuca	26.26	6.00e-16	77.00
IUUC-Atr-002590	Amborella trichopoda	67.39	8.00e-121	426.00
IUUC-Aca-004727	Anolis carolinensis	24.72	3.00e-17	81.30
IUUC-Aly-005623	Arabidopsis lyrata	99.01	4.00e-174	602.00
IUUC-Acl-008069	Aspergillus clavatus	24.14	7.00e-12	64.30
IUUC-Ang-009632	Aspergillus niger	24.37	6.00e-11	60.80
IUUC-Bgr-012009	Blumeria graminis	23.36	8.00e-08	50.10
IUUC-Bta-013554	Bos taurus	27.37	6.00e-17	80.50
IUUC-Bci-013777	Botrytis cinerea	23.08	2.00e-14	72.40
IUUC-Bdi-014526	Brachypodium distachyon	66.13	5.00e-116	409.00
IUUC-Bol-015609	Brassica oleracea	76.23	7.00e-143	499.00
IUUC-Bra-017490	Brassica rapa	76.92	4.00e-153	533.00
IUUC-Cja-019479	Callithrix jacchus	27.37	1.00e-16	79.30
IUUC-Cfa-020587	Canis familiaris	27.37	1.00e-16	80.10
IUUC-Cpo-022322	Cavia porcellus	27.37	1.00e-16	79.70
IUUC-Csa-023413	Chlorocebus sabaeus	27.37	2.00e-16	79.00
IUUC-Cho-024774	Choloepus hoffmanni	27.37	3.00e-16	78.20
IUUC-Cin-025768	Ciona intestinalis	24.29	9.00e-12	63.50
IUUC-Csv-025979	Ciona savignyi	30.23	3.00e-11	60.10
IUUC-Dre-027844	Danio rerio	25.14	2.00e-13	68.90
IUUC-Dno-029464	Dasypus novemcinctus	27.37	1.00e-16	79.70
IUUC-Ete-032388	Echinops telfairi	33.70	5.00e-09	54.30
IUUC-Eca-034091	Equus caballus	27.37	2.00e-16	79.00
IUUC-Eeu-034849	Erinaceus europaeus	32.61	1.00e-08	52.40
IUUC-Fca-036196	Felis catus	27.37	8.00e-17	80.10
IUUC-Fox-038053	Fusarium oxysporum	23.83	2.00e-14	71.60
IUUC-Fso-038281	Fusarium solani	25.39	2.00e-14	73.20
IUUC-Gmo-038640	Gadus morhua	25.14	5.00e-13	67.00
IUUC-Gac-042089	Gasterosteus aculeatus	27.37	4.00e-16	77.80
IUUC-Gma-043411	Glycine max	74.68	3.00e-129	453.00
IUUC-Ggo-044908	Gorilla gorilla	27.37	2.00e-16	78.60
IUUC-Hsa-046298	Homo sapiens	27.37	2.00e-16	79.00
IUUC-Hvu-047386	Hordeum vulgare	82.50	1.00e-101	361.00
IUUC-Itr-048597	Ictidomys tridecemlineatus	30.70	8.00e-10	56.60
IUUC-Lch-049554	Latimeria chalumnae	24.91	8.00e-13	66.60
IUUC-Lpe-051573	Leersia perrieri	66.02	6.00e-116	409.00
IUUC-Lma-052964	Leptosphaeria maculans	26.85	2.00e-09	57.40
IUUC-Laf-053637	Loxodonta africana	27.37	1.00e-16	79.70
IUUC-Mcc-055204	Macaca mulatta	27.37	2.00e-16	79.00
IUUC-Meu-055940	Macropus eugenii	31.00	2.00e-09	54.30
IUUC-Mpo-057618	Magnaporthe poae	22.74	3.00e-10	58.50
IUUC-Mtr-058578	Medicago truncatula	74.17	4.00e-130	456.00
IUUC-Mla-058981	Melampsora laricipopulina	23.55	4.00e-11	61.60
IUUC-Mvi-060402	Microbotryum violaceum	29.70	1.00e-10	60.10
IUUC-Mmr-061554	Microcebus murinus	27.37	2.00e-16	79.00
IUUC-Mdo-062669	Monodelphis domestica	27.37	1.00e-16	79.30
IUUC-Mmu-063104	Mus musculus	26.82	1.00e-15	76.30
IUUC-Mac-064883	Musa acuminata	66.88	2.00e-118	417.00
IUUC-Mpu-066581	Mustela putorius furo	27.37	1.00e-16	79.30
IUUC-Mlu-067434	Myotis lucifugus	27.93	5.00e-17	80.50
IUUC-Ncr-068708	Neurospora crassa	27.89	6.00e-17	80.90
IUUC-Nle-070183	Nomascus leucogenys	27.37	2.00e-16	78.60
IUUC-Opr-070894	Ochotona princeps	27.37	1.00e-16	79.30
IUUC-Ont-072176	Oreochromis niloticus	19.87	3.00e-03	34.70
IUUC-Oan-072769	Ornithorhynchus anatinus	27.37	2.00e-17	81.60
IUUC-Ocu-073947	Oryctolagus cuniculus	27.37	7.00e-17	80.10
IUUC-Oba-075070	Oryza barthii	67.96	3.00e-121	427.00
IUUC-Obr-076808	Oryza brachyantha	66.77	3.00e-118	417.00
IUUC-Ogl-077330	Oryza glaberrima	67.96	2.00e-121	427.00
IUUC-Ogu-078072	Oryza glumaepatula	64.24	1.00e-107	381.00
IUUC-Oin-079403	Oryza indica	67.96	1.00e-121	428.00
IUUC-Ome-081922	Oryza meridionalis	61.81	1.00e-103	369.00
IUUC-Oni-082103	Oryza nivara	63.83	5.00e-80	289.00
IUUC-Opu-083915	Oryza punctata	62.42	2.00e-107	381.00
IUUC-Oru-085264	Oryza rufipogon	62.92	3.00e-80	290.00
IUUC-Osa-086002	Oryza sativa	67.96	9.00e-122	428.00
IUUC-Ola-087405	Oryzias latipes	26.26	8.00e-14	69.30
IUUC-Oga-088542	Otolemur garnettii	27.37	1.00e-16	79.30
IUUC-Oar-089270	Ovis aries	27.37	7.00e-17	80.10
IUUC-Ptr-090658	Pan troglodytes	27.37	2.00e-16	79.00
IUUC-Pan-092852	Papio anubis	27.07	3.00e-16	78.20
IUUC-Psi-093949	Pelodiscus sinensis	27.93	2.00e-17	82.00
IUUC-Pma-094220	Petromyzon marinus	20.57	5.00e-10	57.00
IUUC-Ppa-095443	Physcomitrella patens	38.32	3.00e-55	207.00
IUUC-Pfo-096277	Poecilia formosa	26.82	4.00e-14	70.10
IUUC-Pab-098550	Pongo abelii	27.37	1.00e-16	79.70
IUUC-Pop-099903	Populus trichocarpa	80.95	2.00e-126	444.00
IUUC-Pca-100150	Procavia capensis	27.37	8.00e-17	80.10
IUUC-Ppe-101240	Prunus persica	77.60	1.00e-142	498.00
IUUC-Pva-102742	Pteropus vampyrus	27.93	5.00e-17	80.90
IUUC-Pte-104396	Pyrenophora teres	20.49	1.00e-06	47.80
IUUC-Rno-105452	Rattus norvegicus	25.90	2.00e-16	79.00
IUUC-Sha-107359	Sarcophilus harrisii	26.76	7.00e-17	80.50
IUUC-Ssl-108502	Sclerotinia sclerotiorum	18.18	4.00e-06	45.10
IUUC-Sit-110136	Setaria italica	63.73	1.00e-111	395.00
IUUC-Sly-111297	Solanum lycopersicum	73.20	4.00e-122	429.00
IUUC-Stu-112496	Solanum tuberosum	68.64	5.00e-89	319.00
IUUC-Sar-113186	Sorex araneus	26.67	7.00e-17	80.10
IUUC-Sbi-114871	Sorghum bicolor	67.74	1.00e-118	418.00
IUUC-Ssc-116149	Sus scrofa	27.37	1.00e-16	79.30
IUUC-Tsy-119353	Tarsius syrichta	32.61	4.00e-09	54.30
IUUC-Tni-120854	Tetraodon nigroviridis	27.93	5.00e-15	73.20
IUUC-Tca-121749	Theobroma cacao	79.22	2.00e-147	514.00
IUUC-Tvi-122257	Trichoderma virens	25.66	1.00e-08	52.00
IUUC-Tae-125852	Triticum aestivum	66.12	1.00e-113	401.00
IUUC-Tme-126923	Tuber melanosporum	23.86	3.00e-11	61.60
IUUC-Tbe-127608	Tupaia belangeri	27.37	3.00e-16	78.60
IUUC-Ttr-128671	Tursiops truncatus	26.82	3.00e-16	78.20
IUUC-Vda-129697	Verticillium dahliae	22.56	4.00e-12	64.30
IUUC-Vvi-131396	Vitis vinifera	73.47	1.00e-99	354.00
IUUC-Xtr-132491	Xenopus tropicalis	25.70	5.00e-15	74.30
IUUC-Xma-133340	Xiphophorus maculatus	26.82	2.00e-14	71.60
IUUC-Zma-134799	Zea mays	66.99	5.00e-117	413.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence