iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cre-022731

Ensembl Protein ID

EDP06765

UniProt Accession

A8I9D7; A8I9D7_CHLRE

Genbank Protein ID

EDP06765.1

Protein Name

UPF1 protein

Genbank Nucleotide ID

DS496114

Gene Name

UPF1; CHLREDRAFT_96867

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CHLREDRAFT_96867	EDP06765	EDP06765

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/Other	54.06	0.00e+00	816.00	IUUC-Sce-106206

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Chlamydomonas reinhardtii

Protein Sequence
(Fasta)

SYCGIHNPSC VVKCLSTNKW FCNGRVHGTG SCIILHLVKS KNKEVQLHRD SPLGDTVLEC 60
YASGTRNLFV LGFVPVKSEN TVVLLARDTP PNHPTIRDLN LDLSQWQPIV EDRGLVPWLV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGTTACTGCG GCATCCACAA CCCCAGCTGC GTGGTCAAGT GCCTGAGCAC CAACAAGTGG 60
TTCTGCAACG GCCGCGTGCA CGGCACCGGC TCGTGCATCA TCCTGCACCT GGTGTGTGGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR027417--P-loop_NTPase
IPR018999--RNA-helicase_UPF1_UPF2-interct

Pfam

PF09416--UPF1_Zn_bind

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005524--F:ATP binding
GO:0003677--F:DNA binding
GO:0004386--F:helicase activity
GO:0008270--F:zinc ion binding
GO:0000184--P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

KEGG

cre:CHLREDRAFT_96867

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000680	Aegilops tauschii	64.79	0.00e+00	1017.00
IUUC-Aml-002008	Ailuropoda melanoleuca	58.55	0.00e+00	1001.00
IUUC-Atr-002632	Amborella trichopoda	65.01	0.00e+00	1064.00
IUUC-Apl-003997	Anas platyrhynchos	58.55	0.00e+00	1000.00
IUUC-Aca-004322	Anolis carolinensis	31.05	5.00e-49	187.00
IUUC-Aly-006521	Arabidopsis lyrata	65.26	0.00e+00	1062.00
IUUC-Ath-007059	Arabidopsis thaliana	64.88	0.00e+00	1055.00
IUUC-Ago-007801	Ashbya gossypii	53.42	0.00e+00	812.00
IUUC-Acl-008312	Aspergillus clavatus	59.75	0.00e+00	976.00
IUUC-Afl-008429	Aspergillus flavus	59.75	0.00e+00	976.00
IUUC-Afu-009092	Aspergillus fumigatus	59.95	0.00e+00	978.00
IUUC-Ani-009317	Aspergillus nidulans	59.63	0.00e+00	970.00
IUUC-Ang-009783	Aspergillus niger	59.75	0.00e+00	977.00
IUUC-Aor-010178	Aspergillus oryzae	59.75	0.00e+00	976.00
IUUC-Ate-010294	Aspergillus terreus	59.88	0.00e+00	976.00
IUUC-Ame-010774	Astyanax mexicanus	66.29	8.00e-111	393.00
IUUC-Bgr-012293	Blumeria graminis	60.40	0.00e+00	984.00
IUUC-Bta-012382	Bos taurus	58.55	0.00e+00	1001.00
IUUC-Bci-013937	Botrytis cinerea	59.65	0.00e+00	977.00
IUUC-Bdi-014612	Brachypodium distachyon	65.63	0.00e+00	1075.00
IUUC-Bol-015145	Brassica oleracea	64.88	0.00e+00	1058.00
IUUC-Bra-017370	Brassica rapa	63.64	0.00e+00	1024.00
IUUC-Cel-018240	Caenorhabditis elegans	50.06	0.00e+00	789.00
IUUC-Cja-019892	Callithrix jacchus	59.35	0.00e+00	1009.00
IUUC-Cfa-020700	Canis familiaris	58.55	0.00e+00	1001.00
IUUC-Cpo-021510	Cavia porcellus	58.55	0.00e+00	1001.00
IUUC-Csa-023665	Chlorocebus sabaeus	59.35	0.00e+00	1010.00
IUUC-Cin-025798	Ciona intestinalis	59.89	0.00e+00	924.00
IUUC-Csv-025901	Ciona savignyi	59.48	0.00e+00	937.00
IUUC-Cgl-026653	Colletotrichum gloeosporioides	58.66	0.00e+00	952.00
IUUC-Cne-027014	Cryptococcus neoformans	59.07	0.00e+00	990.00
IUUC-Dre-028705	Danio rerio	59.28	0.00e+00	1002.00
IUUC-Dno-029943	Dasypus novemcinctus	41.67	2.00e-03	35.80
IUUC-Dor-030369	Dipodomys ordii	57.23	0.00e+00	964.00
IUUC-Dme-031767	Drosophila melanogaster	54.91	0.00e+00	909.00
IUUC-Ete-032800	Echinops telfairi	32.18	2.00e-48	186.00
IUUC-Eca-033840	Equus caballus	59.35	0.00e+00	1009.00
IUUC-Eeu-035137	Erinaceus europaeus	26.83	5.10e-01	26.90
IUUC-Fca-035466	Felis catus	58.48	0.00e+00	998.00
IUUC-Fal-037548	Ficedula albicollis	59.28	0.00e+00	1003.00
IUUC-Fox-038023	Fusarium oxysporum	58.28	0.00e+00	951.00
IUUC-Gmo-039285	Gadus morhua	58.35	0.00e+00	996.00
IUUC-Ggr-039810	Gaeumannomyces graminis	57.21	0.00e+00	941.00
IUUC-Gga-040972	Gallus gallus	59.35	0.00e+00	1010.00
IUUC-Gac-042075	Gasterosteus aculeatus	57.91	0.00e+00	995.00
IUUC-Gma-042713	Glycine max	65.38	0.00e+00	1090.00
IUUC-Ggo-045398	Gorilla gorilla	59.35	0.00e+00	1009.00
IUUC-Hsa-046152	Homo sapiens	59.35	0.00e+00	1010.00
IUUC-Hvu-047555	Hordeum vulgare	63.51	3.00e-174	602.00
IUUC-Itr-048247	Ictidomys tridecemlineatus	58.50	0.00e+00	999.00
IUUC-Kpa-049205	Komagataella pastoris	46.82	0.00e+00	678.00
IUUC-Lch-049587	Latimeria chalumnae	63.65	0.00e+00	676.00
IUUC-Lpe-051059	Leersia perrieri	65.26	0.00e+00	1068.00
IUUC-Loc-051911	Lepisosteus oculatus	59.23	0.00e+00	1006.00
IUUC-Lma-053007	Leptosphaeria maculans	59.75	0.00e+00	968.00
IUUC-Laf-054234	Loxodonta africana	58.55	0.00e+00	1001.00
IUUC-Mcc-054762	Macaca mulatta	58.55	0.00e+00	1001.00
IUUC-Meu-056677	Macropus eugenii	63.67	2.00e-120	424.00
IUUC-Mor-057147	Magnaporthe oryzae	57.78	0.00e+00	947.00
IUUC-Mpo-057314	Magnaporthe poae	57.21	0.00e+00	941.00
IUUC-Mtr-058329	Medicago truncatula	65.01	0.00e+00	1087.00
IUUC-Mla-059094	Melampsora laricipopulina	54.47	3.00e-145	506.00
IUUC-Mga-060126	Meleagris gallopavo	58.11	0.00e+00	983.00
IUUC-Mvi-060373	Microbotryum violaceum	58.90	0.00e+00	978.00
IUUC-Mmr-060628	Microcebus murinus	58.55	0.00e+00	1001.00
IUUC-Mdo-061858	Monodelphis domestica	59.35	0.00e+00	1008.00
IUUC-Mmu-064116	Mus musculus	59.23	0.00e+00	1010.00
IUUC-Mac-065136	Musa acuminata	65.38	0.00e+00	1071.00
IUUC-Mpu-066463	Mustela putorius furo	59.35	0.00e+00	1010.00
IUUC-Mlu-068098	Myotis lucifugus	59.35	0.00e+00	1010.00
IUUC-Nfi-068370	Neosartorya fischeri	59.95	0.00e+00	978.00
IUUC-Ncr-068792	Neurospora crassa	58.76	0.00e+00	961.00
IUUC-Nle-070102	Nomascus leucogenys	59.48	0.00e+00	1006.00
IUUC-Opr-070620	Ochotona princeps	56.12	0.00e+00	918.00
IUUC-Ont-072685	Oreochromis niloticus	59.03	0.00e+00	1002.00
IUUC-Oan-073665	Ornithorhynchus anatinus	58.40	0.00e+00	996.00
IUUC-Ocu-074154	Oryctolagus cuniculus	32.43	1.00e-49	189.00
IUUC-Oba-075075	Oryza barthii	63.64	0.00e+00	896.00
IUUC-Obr-076183	Oryza brachyantha	66.76	0.00e+00	954.00
IUUC-Ogl-077691	Oryza glaberrima	65.38	0.00e+00	1068.00
IUUC-Ogu-078423	Oryza glumaepatula	65.38	0.00e+00	1068.00
IUUC-Oin-080107	Oryza indica	65.38	0.00e+00	1068.00
IUUC-Olo-080269	Oryza longistaminata	65.67	0.00e+00	1021.00
IUUC-Ome-081779	Oryza meridionalis	65.38	0.00e+00	1066.00
IUUC-Oni-082366	Oryza nivara	65.38	0.00e+00	1068.00
IUUC-Opu-083958	Oryza punctata	65.38	0.00e+00	1070.00
IUUC-Oru-084182	Oryza rufipogon	65.38	0.00e+00	1068.00
IUUC-Osa-085285	Oryza sativa	65.38	0.00e+00	1067.00
IUUC-Ola-086954	Oryzias latipes	56.48	0.00e+00	962.00
IUUC-Olu-087685	Ostreococcus lucimarinus	57.64	0.00e+00	946.00
IUUC-Oga-088591	Otolemur garnettii	59.35	0.00e+00	1010.00
IUUC-Oar-089417	Ovis aries	58.43	0.00e+00	998.00
IUUC-Ptr-091510	Pan troglodytes	58.73	0.00e+00	991.00
IUUC-Pan-091886	Papio anubis	59.35	0.00e+00	1010.00
IUUC-Psi-093755	Pelodiscus sinensis	60.11	0.00e+00	710.00
IUUC-Pma-094470	Petromyzon marinus	59.18	0.00e+00	1010.00
IUUC-Pno-094963	Phaeosphaeria nodorum	59.75	0.00e+00	969.00
IUUC-Ppa-095479	Physcomitrella patens	65.38	0.00e+00	1082.00
IUUC-Pfo-097456	Poecilia formosa	59.10	0.00e+00	1010.00
IUUC-Pab-098075	Pongo abelii	55.10	0.00e+00	905.00
IUUC-Pop-099557	Populus trichocarpa	66.00	0.00e+00	1088.00
IUUC-Pca-100717	Procavia capensis	66.33	9.00e-120	423.00
IUUC-Ppe-101675	Prunus persica	65.26	0.00e+00	1088.00
IUUC-Pva-103029	Pteropus vampyrus	59.14	0.00e+00	747.00
IUUC-Pgr-103318	Puccinia graminis	59.46	0.00e+00	977.00
IUUC-Ptt-103956	Puccinia triticina	58.91	0.00e+00	967.00
IUUC-Pte-104399	Pyrenophora teres	59.88	0.00e+00	969.00
IUUC-Pyt-104749	Pyrenophora triticirepentis	59.75	0.00e+00	968.00
IUUC-Rno-105784	Rattus norvegicus	59.23	0.00e+00	1009.00
IUUC-Sce-106206	Saccharomyces cerevisiae	54.06	0.00e+00	816.00
IUUC-Sha-106566	Sarcophilus harrisii	58.40	0.00e+00	996.00
IUUC-Sja-107721	Schizosaccharomyces japonicus	55.72	0.00e+00	895.00
IUUC-Spo-108258	Schizosaccharomyces pombe	52.97	0.00e+00	861.00
IUUC-Ssl-108640	Sclerotinia sclerotiorum	55.98	0.00e+00	840.00
IUUC-Sit-109760	Setaria italica	65.75	0.00e+00	1072.00
IUUC-Sly-111807	Solanum lycopersicum	65.01	0.00e+00	1087.00
IUUC-Stu-112869	Solanum tuberosum	64.88	0.00e+00	1085.00
IUUC-Sar-112950	Sorex araneus	32.33	1.00e-40	159.00
IUUC-Sbi-114863	Sorghum bicolor	65.75	0.00e+00	1077.00
IUUC-Sre-115092	Sporisorium reilianum	58.98	0.00e+00	965.00
IUUC-Ssc-115728	Sus scrofa	40.54	1.00e-04	35.40
IUUC-Tgu-117214	Taeniopygia guttata	53.37	0.00e+00	871.00
IUUC-Tru-118386	Takifugu rubripes	58.60	0.00e+00	980.00
IUUC-Tsy-119550	Tarsius syrichta	54.20	8.00e-84	303.00
IUUC-Tni-120212	Tetraodon nigroviridis	57.99	0.00e+00	967.00
IUUC-Tca-121353	Theobroma cacao	65.63	0.00e+00	1097.00
IUUC-Tre-122245	Trichoderma reesei	32.95	1.00e-49	190.00
IUUC-Tvi-122452	Trichoderma virens	56.91	0.00e+00	947.00
IUUC-Tae-123692	Triticum aestivum	65.75	0.00e+00	1075.00
IUUC-Tur-126770	Triticum urartu	60.64	0.00e+00	659.00
IUUC-Tme-126956	Tuber melanosporum	60.95	0.00e+00	989.00
IUUC-Tbe-127873	Tupaia belangeri	31.83	3.00e-46	178.00
IUUC-Ttr-128212	Tursiops truncatus	55.99	0.00e+00	918.00
IUUC-Uma-129327	Ustilago maydis	59.10	0.00e+00	973.00
IUUC-Vda-129858	Verticillium dahliae	58.41	0.00e+00	937.00
IUUC-Vpa-130743	Vicugna pacos	32.84	1.00e-46	179.00
IUUC-Vvi-131222	Vitis vinifera	65.13	0.00e+00	1066.00
IUUC-Xtr-131800	Xenopus tropicalis	57.85	0.00e+00	785.00
IUUC-Xma-133216	Xiphophorus maculatus	59.10	0.00e+00	1010.00
IUUC-Yli-134482	Yarrowia lipolytica	49.75	0.00e+00	784.00
IUUC-Zma-134802	Zea mays	65.75	0.00e+00	1078.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence