iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Stu-112386

Ensembl Protein ID

PGSC0003DMT400036075

UniProt Accession

M1B388; M1B388_SOLTU

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PGSC0003DMG400013893	PGSC0003DMT400036075	PGSC0003DMT400036075
PGSC0003DMG400013893	PGSC0003DMT400036077	PGSC0003DMT400036077

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.40e-07	32.7	45	110
E3 adaptor/Cullin RING/DCX/DWD	2.30e-29	101.4	525	562
UBD/Beta-Prp	1.90e-40	140.2	353	650

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 4    eeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawce 70
            e+lCpI +++ +d   +++G+++   +I  +l ++   cP +++ lt ++l Pn  l +l ++  +
   Q: 45   RELLCPICMQIIKDAFLTACGHSFCYMCIVTHLHNKSD-CPCCSHYLTTSQLYPNFLLDKLMKKTSA 110
           589******************************99999.****************999888877665 PP

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgvllk 37
           gH   v+ ++f s++ l+s+s D t+++WD++++ +++
   Q: 525  GHRKAVSYVKFlSNNELASASTDSTLRLWDVKDNLPVR 562
           79999******9889****************9998876 PP

UBD/Beta-Prp

   S: 14   tcvkfspdksllatgsrdgtikvwdvttgkl........lrslsgheaevtavkfspdgk.ilvtgseDrtikvwdlstgkcvhtlkgh 93
           +++ f +d++l+at++ +++ikv+d+++           + ++s  + + +++++++ +k  ++++  D+++ vwd+ t++ v+ +++h
   Q: 353  YSIEFDRDDELFATAGVSRRIKVFDFSSVVNepadahcpVVEMSTRS-KLSCLSWNKYTKnHIASSDYDGIVTVWDVTTRQSVMEYEEH 440
           568999**********************5558888888877777776.79*****9987769999999********************* PP
   S: 94   edsvlslsfspsg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdl.ktgkllrtltggh 179
           e++++s++fs++  + lvsGs+d  ++vw ++++  + +++ +  + ++cv+++p +   ++ Gs+D  +  +dl +t + ++ ++g h
   Q: 441  EKRAWSVDFSRTEpSMLVSGSDDCKVKVWCTKQEASVLNIDMK--ANICCVKYNPGSsVHIAVGSADHHIHYYDLrNTSQPVHIFSG-H 526
           ***********888***************88888888655554..459*******99999***************77899******9.* PP
   S: 180  tdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW..dlrsgdllktlqlhn.. 264
            ++v  ++f sn +el+s+s+d+t++lwd++ +  vrtl+ght+  + v +s n+e+l +gs+ + ++++   + +  +++ +  +   
   Q: 527  RKAVSYVKFLSN-NELASASTDSTLRLWDVKDNLPVRTLRGHTNEKNFVGLSVNNEFLSCGSETNEVFVYhkAISKPVTWHRFGSPDid 614
           ***********8.7*******************************************************944445555555555555** PP
   S: 265  .......ssvisvavlsfgdnvlvlgsedskvniwk 293
                  s +is  +++ + + ++++ + ++++++ 
   Q: 615  eadedagSYFISAVCWKSDSPTMLAANSQGTIKVLV 650
           ******9999999999***********9**999975 PP

Organism

Solanum tuberosum

Protein Sequence
(Fasta)

MVESSIGGVV PAVKGEGMRR MGDKEEGGSV RDEEVGTVTE WELDRELLCP ICMQIIKDAF 60
LTACGHSFCY MCIVTHLHNK SDCPCCSHYL TTSQLYPNFL LDKLMKKTSA RQISKTASPV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTGGAAA GTTCAATTGG AGGGGTGGTG CCAGCAGTGA AGGGGGAGGG GATGAGGAGG 60
ATGGGGGACA AAGAGGAGGG GGGTAGTGTA AGGGATGAAG AAGTTGGGAC AGTGACAGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR002469--Peptidase_S9B_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00184--RING
SM00320--WD40

Gene Ontology

GO:0016604--C:nuclear body
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0046283--P:anthocyanin-containing compound metabolic process
GO:0006281--P:DNA repair
GO:0009649--P:entrainment of circadian clock
GO:0009640--P:photomorphogenesis
GO:0048573--P:photoperiodism, flowering
GO:0010119--P:regulation of stomatal movement
GO:0009641--P:shade avoidance

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002460	Amborella trichopoda	70.13	0.00e+00	919.00
IUUC-Aly-006014	Arabidopsis lyrata	76.34	0.00e+00	1010.00
IUUC-Ath-007636	Arabidopsis thaliana	73.79	0.00e+00	1023.00
IUUC-Bdi-014152	Brachypodium distachyon	69.89	0.00e+00	905.00
IUUC-Bol-016380	Brassica oleracea	73.93	0.00e+00	1001.00
IUUC-Bra-017690	Brassica rapa	72.34	0.00e+00	976.00
IUUC-Cho-024883	Choloepus hoffmanni	31.37	3.00e-40	159.00
IUUC-Dor-031110	Dipodomys ordii	38.70	1.00e-98	352.00
IUUC-Ete-033016	Echinops telfairi	42.96	3.00e-94	338.00
IUUC-Eeu-034690	Erinaceus europaeus	42.27	2.00e-88	319.00
IUUC-Gma-044187	Glycine max	71.98	0.00e+00	977.00
IUUC-Mtr-058555	Medicago truncatula	72.55	0.00e+00	1010.00
IUUC-Mac-065240	Musa acuminata	69.67	0.00e+00	951.00
IUUC-Olo-080639	Oryza longistaminata	68.36	0.00e+00	899.00
IUUC-Ome-081821	Oryza meridionalis	69.30	0.00e+00	840.00
IUUC-Opu-083295	Oryza punctata	70.27	0.00e+00	916.00
IUUC-Olu-087702	Ostreococcus lucimarinus	48.68	7.00e-76	276.00
IUUC-Ppa-095401	Physcomitrella patens	60.57	0.00e+00	792.00
IUUC-Pfo-097388	Poecilia formosa	37.65	1.00e-117	416.00
IUUC-Pop-099319	Populus trichocarpa	73.93	0.00e+00	1031.00
IUUC-Sly-110895	Solanum lycopersicum	95.57	0.00e+00	1338.00
IUUC-Sar-113230	Sorex araneus	37.35	2.00e-72	265.00
IUUC-Sbi-113962	Sorghum bicolor	64.14	0.00e+00	892.00
IUUC-Tca-121619	Theobroma cacao	76.32	0.00e+00	1025.00
IUUC-Tae-125440	Triticum aestivum	69.52	0.00e+00	924.00
IUUC-Tbe-127253	Tupaia belangeri	38.73	1.00e-73	270.00
IUUC-Vvi-131386	Vitis vinifera	72.38	0.00e+00	993.00
IUUC-Xma-133421	Xiphophorus maculatus	37.65	2.00e-117	415.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence