iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Bdi-014531

UUCD1 version

UUC-BrD-01243

Ensembl Protein ID

BRADI2G51760.1

UniProt Accession

I1HS93; I1HS93_BRADI

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Gene Name

LOC100821384

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
BRADI2G51760	BRADI2G51760.1	BRADI2G51760.1
BRADI2G51760	BRADI2G51760.2	BRADI2G51760.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.90e-37	125.6	145	183
UBD/Beta-Prp	1.40e-57	195.8	15	188

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH++ +  ++f +d + +v+G+ D+ +kvWDl+ g+ll+
   Q: 145  GHSGAIKTIRFtPDgRWIVTGGEDNIVKVWDLTAGKLLH 183
           8***********9999*******************9986 PP

UBD/Beta-Prp

   S: 89   tlkghedsvlslsfspsg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtds 182
            + +h+++v+sl++ +++  ++++G++dr +++w + +++ l   lsgh+++v  v+++  + l+ +Gs ++ ++lWdl+ +k++r ltg h +s
   Q: 15   EFVAHDADVRSLAIGKKTsRVFITGGNDRKVNLWAIGKQTPLL-SLSGHTSSVEAVEFDTAEVLVLAGSSNGSIKLWDLEEAKVVRSLTG-HRSS 107
           5678************555************************.*********************************************9.**** PP
   S: 183  vyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlh 263
            + ++f++ g++++sgs d+++k+wd++++ c++t++gh+  +k +rf+p++ ++v+g++D+ +++Wdl+ g+ll+ ++ h
   Q: 108  CTAVEFHPFGEFFASGSSDTDLKIWDIKKKGCLHTYKGHSGAIKTIRFTPDGRWIVTGGEDNIVKVWDLTAGKLLHDFKFH 188
           ***************************************************************************999765 PP

Organism

Brachypodium distachyon

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MELDFSLTWN TKLEEFVAHD ADVRSLAIGK KTSRVFITGG NDRKVNLWAI GKQTPLLSLS 60
GHTSSVEAVE FDTAEVLVLA GSSNGSIKLW DLEEAKVVRS LTGHRSSCTA VEFHPFGEFF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGGTAG GTTCTGTGGA AAAGGATTTA GCAGTTTCTC TCTTTCTCGA GGATCTACGC 60
GAACGAGGGC ATCCATTTCT TGAAGTAACT AAGCTAAAAC TTGAGGGTTT GCAACTTTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000869	Aegilops tauschii	75.99	0.00e+00	1248.00
IUUC-Bra-017265	Brassica rapa	66.96	3.00e-146	512.00
IUUC-Gma-043323	Glycine max	45.54	0.00e+00	661.00
IUUC-Hvu-047729	Hordeum vulgare	83.41	0.00e+00	1016.00
IUUC-Mac-065245	Musa acuminata	54.25	3.00e-178	618.00
IUUC-Oba-075016	Oryza barthii	75.19	0.00e+00	1137.00
IUUC-Obr-076138	Oryza brachyantha	78.14	0.00e+00	1323.00
IUUC-Ogl-077401	Oryza glaberrima	78.75	0.00e+00	1326.00
IUUC-Ogu-078062	Oryza glumaepatula	76.43	0.00e+00	1274.00
IUUC-Oin-080042	Oryza indica	76.31	0.00e+00	1273.00
IUUC-Olo-080713	Oryza longistaminata	77.89	0.00e+00	1178.00
IUUC-Ome-081192	Oryza meridionalis	73.70	0.00e+00	1081.00
IUUC-Oni-082473	Oryza nivara	76.37	0.00e+00	1265.00
IUUC-Opu-083293	Oryza punctata	71.19	0.00e+00	1169.00
IUUC-Oru-085183	Oryza rufipogon	76.19	0.00e+00	1270.00
IUUC-Osa-085801	Oryza sativa	78.63	0.00e+00	1323.00
IUUC-Pop-100006	Populus trichocarpa	50.57	4.00e-158	551.00
IUUC-Pte-104275	Pyrenophora teres	32.29	6.00e-29	122.00
IUUC-Sit-110364	Setaria italica	77.48	0.00e+00	1224.00
IUUC-Sbi-114389	Sorghum bicolor	70.40	0.00e+00	1144.00
IUUC-Tca-121590	Theobroma cacao	45.58	1.00e-148	520.00
IUUC-Tae-125511	Triticum aestivum	84.45	0.00e+00	1384.00
IUUC-Tur-126181	Triticum urartu	79.25	0.00e+00	1309.00
IUUC-Zma-135921	Zea mays	76.78	0.00e+00	1235.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence