iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-113971

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000760

Gene Name

SORBI_001G448700

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb01g042180	Sb01g042180.1	Sb01g042180.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.10e-30	106.3	65	135

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceen 72
           vp+ f+CpIsle+M dPv+l++G+ty+r++I +wla g++tcP+t+q+l ++ l+Pn tlr+li aw +++
   Q: 65   VPAVFICPISLEPMVDPVTLCTGQTYERANISRWLALGHRTCPTTMQELWDDALTPNATLRQLIAAWFSRR 135
           89*****************************************************************9875 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MPQYQELPCG GQVLDIDTAL KDGILGGALE PVDAAAGDAG KQPLELRKMM DELDAAGDGG 60
GDEAVPAVFI CPISLEPMVD PVTLCTGQTY ERANISRWLA LGHRTCPTTM QELWDDALTP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATATCTCTGT GCTGCATCAC TCGCCGCAAT CCACTCCCAA TCCAAAACCC GAAAGCTCTC 60
CGCTCCGCCT CCCTGTTCGC TCGTCCGCCT TTTGACTCTA TCTCCTAGCT AGCTGCTGTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

sbi:SORBI_01g042180

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000254	Aegilops tauschii	89.11	0.00e+00	801.00
IUUC-Atr-002608	Amborella trichopoda	59.48	1.00e-134	472.00
IUUC-Aly-005542	Arabidopsis lyrata	58.93	2.00e-138	484.00
IUUC-Ath-007399	Arabidopsis thaliana	60.49	5.00e-141	493.00
IUUC-Bdi-014966	Brachypodium distachyon	89.76	0.00e+00	820.00
IUUC-Bol-015410	Brassica oleracea	61.00	4.00e-138	483.00
IUUC-Bra-017594	Brassica rapa	62.29	1.00e-137	481.00
IUUC-Gma-043270	Glycine max	56.69	1.00e-149	521.00
IUUC-Hvu-047172	Hordeum vulgare	89.35	0.00e+00	787.00
IUUC-Lpe-050937	Leersia perrieri	86.61	0.00e+00	716.00
IUUC-Mtr-058060	Medicago truncatula	58.21	6.00e-148	516.00
IUUC-Mac-065223	Musa acuminata	63.81	9.00e-148	515.00
IUUC-Oba-075363	Oryza barthii	83.22	0.00e+00	631.00
IUUC-Obr-076221	Oryza brachyantha	89.76	0.00e+00	772.00
IUUC-Ogl-077601	Oryza glaberrima	89.54	0.00e+00	711.00
IUUC-Ogu-078802	Oryza glumaepatula	89.76	0.00e+00	754.00
IUUC-Oin-079670	Oryza indica	89.76	0.00e+00	712.00
IUUC-Olo-080252	Oryza longistaminata	89.01	1.00e-119	422.00
IUUC-Ome-081565	Oryza meridionalis	89.76	0.00e+00	712.00
IUUC-Oni-082638	Oryza nivara	89.76	0.00e+00	712.00
IUUC-Opu-083387	Oryza punctata	89.32	0.00e+00	708.00
IUUC-Oru-084585	Oryza rufipogon	89.76	0.00e+00	712.00
IUUC-Osa-086056	Oryza sativa	89.76	0.00e+00	712.00
IUUC-Ppa-095691	Physcomitrella patens	33.42	2.00e-42	166.00
IUUC-Pop-098956	Populus trichocarpa	58.97	6.00e-140	489.00
IUUC-Ppe-101369	Prunus persica	59.41	3.00e-149	520.00
IUUC-Sit-109761	Setaria italica	97.17	0.00e+00	812.00
IUUC-Sly-111041	Solanum lycopersicum	53.78	3.00e-124	437.00
IUUC-Stu-112727	Solanum tuberosum	58.22	1.00e-150	525.00
IUUC-Tca-121202	Theobroma cacao	61.47	2.00e-158	551.00
IUUC-Tae-123496	Triticum aestivum	89.11	0.00e+00	801.00
IUUC-Tur-126157	Triticum urartu	89.67	2.00e-90	324.00
IUUC-Vvi-131367	Vitis vinifera	62.20	3.00e-155	540.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence