iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ssc-115755

Ensembl Protein ID

ENSSSCP00000011265.2

UniProt Accession

F2Z5G6; F2Z5G6_PIG

Genbank Protein ID

ENSSSCP00000011265

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CT737175

Gene Name

LDB1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000010574.2	ENSSSCT00000011567.2	ENSSSCP00000011265.2

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/U-box	62.76	4.00e-126	447.00	IUUC-Dme-031667

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Sus scrofa

Protein Sequence
(Fasta)

MLDRDVGPTP MYPPTYLEPG IGRHTPYGNQ TDYRIFELNK RLQNWTEECD NLWWDAFTTE 60
FFEDDAMLTI TFCLEDGPKR YTIGRTLIPR YFRSIFEGGA TELYYVLKHP KEAFHSNFVS 120

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Nucleotide Sequence
(Fasta)

CAGCTCCTCC ACGCTCCCAA CTCGGCGGCG GCCGGAGGAC AGACACACTG CGTGAGGCTT 60
CGCCTCCTTT CCTCCCCCCT CGCCCGCCCT CTCCGCCTCG GGGTCGCTGC CTCGGTCTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR030167--LDB1
IPR029005--LIM-bd/SEUSS

Gene Ontology

GO:0031252--C:cell leading edge
GO:0000790--C:nuclear chromatin
GO:0005667--C:transcription factor complex
GO:0003682--F:chromatin binding
GO:0001158--F:enhancer sequence-specific DNA binding
GO:0003712--F:transcription cofactor activity
GO:0009948--P:anterior/posterior axis specification
GO:0022607--P:cellular component assembly
GO:0021702--P:cerebellar Purkinje cell differentiation
GO:0010669--P:epithelial structure maintenance
GO:0001702--P:gastrulation with mouth forming second
GO:0001942--P:hair follicle development
GO:0043973--P:histone H3-K4 acetylation
GO:0045647--P:negative regulation of erythrocyte differentiation
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0045785--P:positive regulation of cell adhesion
GO:0046985--P:positive regulation of hemoglobin biosynthetic process
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0030334--P:regulation of cell migration
GO:0032784--P:regulation of DNA-templated transcription, elongation
GO:0051893--P:regulation of focal adhesion assembly
GO:0043549--P:regulation of kinase activity
GO:0035019--P:somatic stem cell population maintenance
GO:0006366--P:transcription from RNA polymerase II promoter
GO:0000972--P:transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0016055--P:Wnt signaling pathway

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000177	Aegilops tauschii	25.90	2.00e-04	41.20
IUUC-Aml-002031	Ailuropoda melanoleuca	99.47	0.00e+00	693.00
IUUC-Atr-003083	Amborella trichopoda	23.53	3.00e-04	40.80
IUUC-Apl-004210	Anas platyrhynchos	96.99	8.00e-159	552.00
IUUC-Aca-005241	Anolis carolinensis	98.40	0.00e+00	685.00
IUUC-Aly-006204	Arabidopsis lyrata	23.94	2.00e-06	47.80
IUUC-Ath-007339	Arabidopsis thaliana	23.94	2.00e-06	48.10
IUUC-Acl-008255	Aspergillus clavatus	20.63	3.00e-06	47.00
IUUC-Ame-010910	Astyanax mexicanus	94.13	0.00e+00	654.00
IUUC-Bgr-012180	Blumeria graminis	22.08	9.00e-05	42.00
IUUC-Bta-012596	Bos taurus	74.08	4.00e-155	540.00
IUUC-Bci-013927	Botrytis cinerea	26.03	3.00e-06	47.40
IUUC-Bol-015721	Brassica oleracea	24.48	4.00e-07	50.10
IUUC-Bra-017183	Brassica rapa	24.48	4.00e-07	50.10
IUUC-Cel-018189	Caenorhabditis elegans	33.19	1.00e-28	120.00
IUUC-Cja-019586	Callithrix jacchus	75.14	3.00e-156	544.00
IUUC-Cfa-021188	Canis familiaris	99.47	0.00e+00	691.00
IUUC-Cpo-022350	Cavia porcellus	98.93	0.00e+00	684.00
IUUC-Csa-023816	Chlorocebus sabaeus	99.20	0.00e+00	690.00
IUUC-Cho-024958	Choloepus hoffmanni	60.21	3.00e-63	235.00
IUUC-Cin-025721	Ciona intestinalis	50.00	5.00e-88	317.00
IUUC-Csv-026065	Ciona savignyi	50.94	1.00e-92	332.00
IUUC-Dre-027356	Danio rerio	69.62	2.00e-151	528.00
IUUC-Dno-029918	Dasypus novemcinctus	100.00	0.00e+00	673.00
IUUC-Dor-030634	Dipodomys ordii	99.47	0.00e+00	694.00
IUUC-Dse-031245	Dothistroma septosporum	24.67	1.00e-04	42.00
IUUC-Dme-031667	Drosophila melanogaster	62.57	5.00e-124	437.00
IUUC-Ete-032246	Echinops telfairi	72.83	2.00e-151	528.00
IUUC-Eca-034015	Equus caballus	74.58	1.00e-156	545.00
IUUC-Eeu-034902	Erinaceus europaeus	99.47	0.00e+00	694.00
IUUC-Fca-035903	Felis catus	98.94	0.00e+00	687.00
IUUC-Fal-037407	Ficedula albicollis	75.56	4.00e-153	533.00
IUUC-Gmo-039466	Gadus morhua	90.59	0.00e+00	679.00
IUUC-Ggr-040030	Gaeumannomyces graminis	25.93	6.00e-03	36.20
IUUC-Gga-040214	Gallus gallus	98.93	0.00e+00	690.00
IUUC-Gac-042214	Gasterosteus aculeatus	90.21	0.00e+00	683.00
IUUC-Gma-042794	Glycine max	23.90	4.00e-06	47.00
IUUC-Ggo-044988	Gorilla gorilla	74.30	6.00e-157	546.00
IUUC-Hsa-046092	Homo sapiens	75.00	8.00e-158	549.00
IUUC-Itr-047934	Ictidomys tridecemlineatus	99.47	0.00e+00	692.00
IUUC-Lch-049895	Latimeria chalumnae	81.05	6.00e-98	349.00
IUUC-Lpe-050806	Leersia perrieri	25.34	7.00e-06	45.80
IUUC-Loc-052845	Lepisosteus oculatus	95.73	0.00e+00	680.00
IUUC-Lma-053090	Leptosphaeria maculans	23.62	2.00e-04	41.20
IUUC-Laf-054538	Loxodonta africana	96.46	0.00e+00	641.00
IUUC-Mcc-055116	Macaca mulatta	79.83	3.00e-117	414.00
IUUC-Meu-056777	Macropus eugenii	93.87	0.00e+00	637.00
IUUC-Mpo-057376	Magnaporthe poae	27.16	5.00e-03	36.60
IUUC-Mtr-058142	Medicago truncatula	25.83	4.00e-06	47.00
IUUC-Mga-059716	Meleagris gallopavo	75.00	3.00e-152	530.00
IUUC-Mmr-060649	Microcebus murinus	74.02	2.00e-155	541.00
IUUC-Mdo-062535	Monodelphis domestica	74.58	2.00e-153	534.00
IUUC-Mmu-064036	Mus musculus	74.44	3.00e-158	550.00
IUUC-Mac-065338	Musa acuminata	23.70	2.00e-05	44.30
IUUC-Mpu-065719	Mustela putorius furo	99.47	0.00e+00	692.00
IUUC-Mlu-067219	Myotis lucifugus	97.61	0.00e+00	674.00
IUUC-Ncr-068691	Neurospora crassa	22.73	1.00e-04	41.60
IUUC-Nle-068983	Nomascus leucogenys	75.14	9.00e-157	545.00
IUUC-Opr-070467	Ochotona princeps	99.47	0.00e+00	694.00
IUUC-Ont-071566	Oreochromis niloticus	93.07	0.00e+00	688.00
IUUC-Oan-073368	Ornithorhynchus anatinus	98.40	0.00e+00	679.00
IUUC-Ocu-074854	Oryctolagus cuniculus	74.30	1.00e-157	548.00
IUUC-Ome-081687	Oryza meridionalis	24.64	3.00e-03	37.00
IUUC-Ola-086364	Oryzias latipes	93.33	0.00e+00	688.00
IUUC-Oga-088235	Otolemur garnettii	73.18	3.00e-152	531.00
IUUC-Oar-089547	Ovis aries	99.47	0.00e+00	692.00
IUUC-Ptr-091423	Pan troglodytes	74.58	3.00e-156	544.00
IUUC-Pan-092378	Papio anubis	99.20	0.00e+00	692.00
IUUC-Psi-093638	Pelodiscus sinensis	75.98	2.00e-151	528.00
IUUC-Pma-094384	Petromyzon marinus	66.10	2.00e-52	197.00
IUUC-Pno-095027	Phaeosphaeria nodorum	22.66	3.00e-04	40.00
IUUC-Pfo-096031	Poecilia formosa	90.40	0.00e+00	687.00
IUUC-Pab-097886	Pongo abelii	75.14	9.00e-157	545.00
IUUC-Pop-099430	Populus trichocarpa	25.43	1.00e-05	45.40
IUUC-Pca-101138	Procavia capensis	99.47	0.00e+00	694.00
IUUC-Ppe-101293	Prunus persica	28.57	6.00e-06	45.80
IUUC-Pva-103215	Pteropus vampyrus	74.58	3.00e-157	547.00
IUUC-Pte-104238	Pyrenophora teres	24.41	3.00e-04	40.00
IUUC-Rno-105968	Rattus norvegicus	74.72	2.00e-158	551.00
IUUC-Sha-107595	Sarcophilus harrisii	98.67	0.00e+00	679.00
IUUC-Ssl-108527	Sclerotinia sclerotiorum	26.14	7.00e-06	45.40
IUUC-Smo-109552	Selaginella moellendorffii	18.65	3.00e-04	40.80
IUUC-Sly-110873	Solanum lycopersicum	28.57	1.00e-05	45.40
IUUC-Stu-112586	Solanum tuberosum	20.00	8.00e-03	35.80
IUUC-Sar-113076	Sorex araneus	72.53	3.00e-102	364.00
IUUC-Sre-115143	Sporisorium reilianum	18.84	2.10e-02	34.30
IUUC-Tgu-117326	Taeniopygia guttata	75.28	2.00e-152	531.00
IUUC-Tru-117858	Takifugu rubripes	72.12	1.00e-154	538.00
IUUC-Tsy-119296	Tarsius syrichta	67.88	8.00e-137	479.00
IUUC-Tni-119822	Tetraodon nigroviridis	87.50	0.00e+00	626.00
IUUC-Tca-120935	Theobroma cacao	28.57	6.00e-06	46.60
IUUC-Tbe-127366	Tupaia belangeri	97.87	0.00e+00	669.00
IUUC-Ttr-128484	Tursiops truncatus	74.47	2.00e-145	508.00
IUUC-Vpa-130304	Vicugna pacos	72.14	5.00e-117	413.00
IUUC-Vvi-131560	Vitis vinifera	28.42	2.00e-05	45.10
IUUC-Xtr-132062	Xenopus tropicalis	98.39	0.00e+00	688.00
IUUC-Xma-134288	Xiphophorus maculatus	93.33	0.00e+00	690.00
IUUC-Yli-134374	Yarrowia lipolytica	20.00	4.00e-06	46.20
IUUC-Zma-135310	Zea mays	22.10	4.00e-04	40.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence