iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Aly-005911

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Predicted protein

Genbank Nucleotide ID

GL348720

Gene Name

ATRING1A; ARALYDRAFT_683727

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Al_scaffold_0008_547	Al_scaffold_0008_547	Al_scaffold_0008_547

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UFD/RAWUL	2.10e-20	73.7	404	511

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UFD/RAWUL

   S: 1    islsLeplesnkakddsklkkkylrcsarltVkhlkkflaeklklsssyevdllce........................dev..Ledn 63
           i+++L++l++++++d   l+++yl+c+++l Vk+l++f+a++++l+++ ev+ll +                        de+  Ledn
   Q: 404  IHVKLVSLDTKCIPD---LPQPYLCCRPTLLVKQLREFVALQMHLKTE-EVELLATrrggedmaienlpvvtpasaatskDEMqsLEDN 488
           89*************...******************************.*******99999888876666666666655533277**** PP
   S: 64   etLeeikyifiwkkegpLvLqYr 86
           et +++k++fi+++e++L+++Yr
   Q: 489  ETFSRLKVDFISSHEQHLIIAYR 511
           **********************9 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MSVSKSFSSA EIPDVADQPR DQFNPQAEQD PQDKAEKKEG DDEEVKHDET EQEEEEVMIP 60
NEAEEEEEED GDEKEEEEEE EEAAEEEEEE EEEEEEEEED EEEEDSKSSI SGDQSEFMEI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCTGTGT CGAAGAGCTT CTCGTCGGCT GAGATTCCCG ATGTGGCAGA CCAACCACGC 60
GACCAATTTA ACCCGCAAGC TGAACAGGAT CCACAAGACA AGGCTGAGAA GAAAGAAGGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005634--C:nucleus
GO:0008270--F:zinc ion binding
GO:0045814--P:negative regulation of gene expression, epigenetic

KEGG

aly:ARALYDRAFT_683727

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000516	Aegilops tauschii	48.26	2.00e-64	238.00
IUUC-Atr-002625	Amborella trichopoda	37.14	4.00e-08	53.50
IUUC-Apl-003587	Anas platyrhynchos	50.00	2.00e-23	102.00
IUUC-Ath-006675	Arabidopsis thaliana	88.46	2.00e-169	588.00
IUUC-Ame-010622	Astyanax mexicanus	50.00	2.00e-23	102.00
IUUC-Bdi-014202	Brachypodium distachyon	46.22	6.00e-65	240.00
IUUC-Bol-015993	Brassica oleracea	76.61	9.00e-133	466.00
IUUC-Bra-017150	Brassica rapa	73.71	5.00e-128	450.00
IUUC-Cpo-021402	Cavia porcellus	50.00	2.00e-23	102.00
IUUC-Cre-022597	Chlamydomonas reinhardtii	35.16	1.00e-06	47.00
IUUC-Dre-027685	Danio rerio	50.00	2.00e-23	102.00
IUUC-Dme-031721	Drosophila melanogaster	46.08	2.00e-23	102.00
IUUC-Fal-037376	Ficedula albicollis	50.00	3.00e-23	102.00
IUUC-Gmo-038879	Gadus morhua	47.78	6.00e-22	97.40
IUUC-Gga-041134	Gallus gallus	50.00	2.00e-23	102.00
IUUC-Gac-042589	Gasterosteus aculeatus	50.00	2.00e-23	102.00
IUUC-Gma-044107	Glycine max	46.81	4.00e-85	307.00
IUUC-Hvu-047152	Hordeum vulgare	47.95	2.00e-72	265.00
IUUC-Lch-049442	Latimeria chalumnae	53.25	3.00e-23	101.00
IUUC-Lpe-050923	Leersia perrieri	42.97	1.00e-72	266.00
IUUC-Loc-052544	Lepisosteus oculatus	50.00	4.00e-23	101.00
IUUC-Meu-056000	Macropus eugenii	50.00	2.00e-22	99.40
IUUC-Mtr-058234	Medicago truncatula	45.16	2.00e-78	285.00
IUUC-Mga-059354	Meleagris gallopavo	50.00	2.00e-23	102.00
IUUC-Mdo-062206	Monodelphis domestica	50.00	2.00e-23	102.00
IUUC-Mac-064893	Musa acuminata	52.80	3.00e-91	328.00
IUUC-Opr-070456	Ochotona princeps	48.72	4.00e-08	52.00
IUUC-Ont-072541	Oreochromis niloticus	50.00	3.00e-23	102.00
IUUC-Oan-073454	Ornithorhynchus anatinus	50.00	2.00e-23	102.00
IUUC-Oba-075605	Oryza barthii	76.98	3.00e-50	192.00
IUUC-Obr-076282	Oryza brachyantha	46.77	5.00e-67	247.00
IUUC-Ogl-077288	Oryza glaberrima	42.49	2.00e-70	258.00
IUUC-Ogu-078992	Oryza glumaepatula	76.98	3.00e-50	192.00
IUUC-Oin-079939	Oryza indica	42.64	9.00e-71	260.00
IUUC-Olo-081069	Oryza longistaminata	69.84	2.00e-48	186.00
IUUC-Oni-083103	Oryza nivara	47.25	1.00e-61	229.00
IUUC-Oru-084356	Oryza rufipogon	76.98	4.00e-50	192.00
IUUC-Ola-086937	Oryzias latipes	50.00	3.00e-23	102.00
IUUC-Oga-088881	Otolemur garnettii	50.00	4.00e-22	98.60
IUUC-Oar-089823	Ovis aries	50.00	3.00e-23	102.00
IUUC-Psi-093349	Pelodiscus sinensis	50.00	2.00e-23	102.00
IUUC-Ppa-095164	Physcomitrella patens	79.61	3.00e-39	155.00
IUUC-Pfo-096803	Poecilia formosa	50.00	5.00e-23	101.00
IUUC-Pab-098392	Pongo abelii	50.00	2.00e-23	102.00
IUUC-Pop-100011	Populus trichocarpa	49.23	3.00e-89	321.00
IUUC-Pca-100649	Procavia capensis	50.00	5.00e-22	97.80
IUUC-Ppe-101894	Prunus persica	57.19	1.00e-65	242.00
IUUC-Pva-102498	Pteropus vampyrus	50.00	5.00e-23	100.00
IUUC-Ptt-103843	Puccinia triticina	28.89	2.00e-05	43.10
IUUC-Sha-107645	Sarcophilus harrisii	50.00	2.00e-23	102.00
IUUC-Smo-108741	Selaginella moellendorffii	84.42	8.00e-38	147.00
IUUC-Sit-109707	Setaria italica	38.57	3.00e-72	265.00
IUUC-Sly-111537	Solanum lycopersicum	48.42	2.00e-72	265.00
IUUC-Stu-112805	Solanum tuberosum	47.98	5.00e-73	267.00
IUUC-Sar-113064	Sorex araneus	50.00	6.00e-23	100.00
IUUC-Sbi-114112	Sorghum bicolor	45.35	9.00e-68	250.00
IUUC-Ssc-115830	Sus scrofa	50.00	2.00e-23	102.00
IUUC-Tgu-116694	Taeniopygia guttata	50.00	2.00e-23	102.00
IUUC-Tru-117837	Takifugu rubripes	50.00	2.00e-23	102.00
IUUC-Tni-120389	Tetraodon nigroviridis	50.00	3.00e-23	102.00
IUUC-Tca-121428	Theobroma cacao	51.59	3.00e-96	345.00
IUUC-Tae-123769	Triticum aestivum	44.41	6.00e-71	260.00
IUUC-Tur-126796	Triticum urartu	48.52	4.00e-72	265.00
IUUC-Vvi-131143	Vitis vinifera	51.10	5.00e-97	347.00
IUUC-Xtr-131799	Xenopus tropicalis	53.25	3.00e-23	102.00
IUUC-Xma-133424	Xiphophorus maculatus	51.25	4.00e-23	101.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence