iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114814

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000763

Gene Name

SORBI_004G146800

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g019280	Sb04g019280.1	Sb04g019280.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	3.60e-32	111.0	80	152

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           vpe+flCpIs e+MrdPvvl+sG+tydr+ I++wl+ g++tcP t+q l+++ ++Pn+ +r++i++wc +n++
   Q: 80   VPEHFLCPISSEIMRDPVVLASGQTYDRRFIQEWLSAGNRTCPQTQQVLSNTIIIPNHLVRSMISQWCTDNGI 152
           8********************************************************************9986 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MAKPTPVASA EEAAAMRRRL RRLVAAVAAG SADAEAFDEA AEALAKLRDA ELGPRKDNRA 60
GDGHGDGGQN RRRTETEAAV PEHFLCPISS EIMRDPVVLA SGQTYDRRFI QEWLSAGNRT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGAAGC CGACGCCGGT GGCCTCGGCA GAGGAGGCGG CGGCGATGCG GCGCCGGCTG 60
AGGCGCCTGG TGGCCGCGGT GGCGGCCGGG AGCGCCGACG CCGAGGCCTT CGACGAGGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR011987--ATPase_V1-cplx_hsu_C
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

sbi:SORBI_04g019280

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000164	Aegilops tauschii	57.38	1.00e-128	452.00
IUUC-Aly-006420	Arabidopsis lyrata	50.90	4.00e-112	397.00
IUUC-Ath-007457	Arabidopsis thaliana	51.28	1.00e-113	402.00
IUUC-Bdi-014069	Brachypodium distachyon	84.32	0.00e+00	652.00
IUUC-Bol-016297	Brassica oleracea	49.23	5.00e-107	380.00
IUUC-Bra-017257	Brassica rapa	50.90	9.00e-110	389.00
IUUC-Gma-043611	Glycine max	49.49	2.00e-106	379.00
IUUC-Hvu-047411	Hordeum vulgare	63.22	1.00e-125	441.00
IUUC-Lpe-050825	Leersia perrieri	84.28	0.00e+00	652.00
IUUC-Mtr-058046	Medicago truncatula	50.92	1.00e-102	365.00
IUUC-Mac-065616	Musa acuminata	64.06	5.00e-144	503.00
IUUC-Oba-075311	Oryza barthii	84.41	0.00e+00	628.00
IUUC-Obr-076232	Oryza brachyantha	81.45	3.00e-177	613.00
IUUC-Ogl-077647	Oryza glaberrima	82.67	0.00e+00	661.00
IUUC-Ogu-078448	Oryza glumaepatula	82.92	0.00e+00	663.00
IUUC-Oin-079693	Oryza indica	84.68	0.00e+00	629.00
IUUC-Olo-080462	Oryza longistaminata	84.68	0.00e+00	654.00
IUUC-Ome-081796	Oryza meridionalis	84.64	0.00e+00	647.00
IUUC-Oni-082158	Oryza nivara	82.92	0.00e+00	663.00
IUUC-Opu-084131	Oryza punctata	84.68	0.00e+00	654.00
IUUC-Oru-084335	Oryza rufipogon	82.92	0.00e+00	663.00
IUUC-Osa-085556	Oryza sativa	82.92	0.00e+00	662.00
IUUC-Pop-099087	Populus trichocarpa	52.59	4.00e-110	390.00
IUUC-Ppe-101662	Prunus persica	53.09	5.00e-116	410.00
IUUC-Sit-110812	Setaria italica	88.25	0.00e+00	703.00
IUUC-Sly-110911	Solanum lycopersicum	50.00	4.00e-116	410.00
IUUC-Stu-112732	Solanum tuberosum	50.77	7.00e-118	416.00
IUUC-Tca-121080	Theobroma cacao	52.33	2.00e-117	414.00
IUUC-Tae-123657	Triticum aestivum	62.85	4.00e-135	473.00
IUUC-Tur-126060	Triticum urartu	56.98	4.00e-132	464.00
IUUC-Vvi-131590	Vitis vinifera	54.81	2.00e-122	431.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence