iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Osa-085662

Ensembl Protein ID

OS02T0234300-01

UniProt Accession

Q6EUK7; B7E7M7; Q0E2J5; PUB04_ORYSJ

Genbank Protein ID

BAD27662.1; BAF08293.1; EEE56620.1; BAG88374.1

Protein Name

U-box domain-containing protein 4; Plant U-box protein 4; RING-type E3 ubiquitin transferase PUB4

Genbank Nucleotide ID

AP004030; AP008208; AP014958; AK062592

Gene Name

PUB4; Os02g0234300; LOC_Os02g13960; OJ1145_E05.4; OsJ_06003

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OS02G0234300	OS02T0234300-01	OS02T0234300-01

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/U-box	U-box	19825583

Classification

Family	E-value	Score	Start	End
E3 activity/RING/U-box	1.70e-30	105.8	149	218

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 1    evpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawce 70
           +vp+ef CpIsl+lMrdPvv+++G+tydr sI +w+++g++tcP  +q+l+++ lvPn +lr+li++wc 
   Q: 149  SVPKEFSCPISLDLMRDPVVASTGQTYDRPSIIQWIEEGHSTCPNSGQTLADHRLVPNRALRSLISQWCG 218
           59*******************************************************************6 PP

Organism

Oryza sativa

Functional Description
(View)

Possesses E3 ubiquitin-protein ligase in vitro.

Protein Sequence
(Fasta)

LDVLPAASLR LSHDATGLLD LLRAHCRCRA PAQYHDPDEA ALRERLMDAL RQFDLGQPPD 60
HPSLQSLLAD MGISTAASCR AEIDYLEEQI LSQEEDTDLP LVGSVLALLR YCLFAVFDPS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCCTCGACGT CCTCCCGGCG GCATCACTCC GCCTCTCGCA CGACGCCACC GGCCTGCTCG 60
ACCTCCTCCG CGCCCACTGC CGCTGCCGCG CGCCCGCGCA ATACCATGAC CCCGACGAGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity
GO:0016567--P:protein ubiquitination

KEGG

osa:4328818

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001129	Aegilops tauschii	84.59	0.00e+00	932.00
IUUC-Aly-006027	Arabidopsis lyrata	48.60	2.00e-133	468.00
IUUC-Ath-007054	Arabidopsis thaliana	48.61	6.00e-133	467.00
IUUC-Bdi-014675	Brachypodium distachyon	81.49	0.00e+00	905.00
IUUC-Bol-015901	Brassica oleracea	50.54	3.00e-137	481.00
IUUC-Bra-017296	Brassica rapa	49.46	1.00e-132	466.00
IUUC-Gma-043020	Glycine max	50.09	3.00e-147	514.00
IUUC-Hvu-047822	Hordeum vulgare	83.70	0.00e+00	952.00
IUUC-Lpe-051105	Leersia perrieri	91.13	0.00e+00	1020.00
IUUC-Mtr-057764	Medicago truncatula	49.48	9.00e-139	486.00
IUUC-Mac-065609	Musa acuminata	50.83	2.00e-141	494.00
IUUC-Oba-075480	Oryza barthii	99.81	0.00e+00	1090.00
IUUC-Obr-076773	Oryza brachyantha	93.05	2.00e-164	570.00
IUUC-Ogl-077156	Oryza glaberrima	99.83	0.00e+00	1172.00
IUUC-Ogu-078640	Oryza glumaepatula	100.00	0.00e+00	1174.00
IUUC-Oin-079253	Oryza indica	96.52	0.00e+00	1121.00
IUUC-Olo-080903	Oryza longistaminata	99.63	0.00e+00	1087.00
IUUC-Ome-081982	Oryza meridionalis	99.30	0.00e+00	1165.00
IUUC-Oni-082824	Oryza nivara	100.00	0.00e+00	1174.00
IUUC-Opu-083758	Oryza punctata	96.52	0.00e+00	1104.00
IUUC-Oru-084718	Oryza rufipogon	100.00	0.00e+00	1174.00
IUUC-Pop-099239	Populus trichocarpa	50.00	6.00e-131	460.00
IUUC-Ppe-101890	Prunus persica	50.77	2.00e-132	465.00
IUUC-Sit-110022	Setaria italica	85.54	0.00e+00	937.00
IUUC-Sly-111463	Solanum lycopersicum	49.57	1.00e-131	462.00
IUUC-Stu-111976	Solanum tuberosum	49.57	1.00e-131	462.00
IUUC-Sbi-114100	Sorghum bicolor	84.32	0.00e+00	934.00
IUUC-Ssc-115592	Sus scrofa	20.45	3.00e-06	45.10
IUUC-Tca-121221	Theobroma cacao	50.26	2.00e-142	498.00
IUUC-Tae-124437	Triticum aestivum	84.22	0.00e+00	955.00
IUUC-Tur-126627	Triticum urartu	86.11	0.00e+00	858.00
IUUC-Vvi-131159	Vitis vinifera	50.09	7.00e-130	456.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence