iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114100

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000763

Gene Name

SORBI_004G103000

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g008430	Sb04g008430.1	Sb04g008430.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	3.40e-31	107.9	297	369

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 1    evpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceens 73
           +vp+ef CpIsl+lMrdPvv+++G+tydr sI +w+++g++tcP  +q l+++ lvPn +lr+li++wc  ++
   Q: 297  SVPKEFSCPISLDLMRDPVVVSTGQTYDRPSIIQWIDEGHSTCPNSGQALSDNRLVPNQALRSLISQWCGVHG 369
           59*******************************************************************9886 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MAAPASSPVE FLLRRPQPRQ RRRPPLAGAF FAPTGLSGAP LLRALASLAA DVLATPPPPS 60
QRRNLDALMR RLALLSALLD SLLLLLADEG EAAFSDAANL CFRELYVVLF RADLLVSYVA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCCGCGC CGGCCTCGTC GCCGGTCGAG TTCCTGCTCC GCCGCCCGCA ACCGCGCCAG 60
CGGAGGAGGC CGCCTCTGGC CGGCGCGTTC TTCGCGCCCA CGGGGCTTTC CGGCGCGCCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity
GO:0009814--P:defense response, incompatible interaction

KEGG

sbi:SORBI_04g008430

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001129	Aegilops tauschii	83.67	0.00e+00	907.00
IUUC-Aly-006027	Arabidopsis lyrata	48.69	3.00e-149	521.00
IUUC-Ath-007054	Arabidopsis thaliana	48.28	1.00e-148	519.00
IUUC-Bdi-014675	Brachypodium distachyon	81.69	0.00e+00	953.00
IUUC-Bol-015274	Brassica oleracea	45.29	1.00e-152	532.00
IUUC-Bra-017149	Brassica rapa	45.98	6.00e-161	560.00
IUUC-Gma-043020	Glycine max	49.51	1.00e-153	536.00
IUUC-Hvu-047822	Hordeum vulgare	82.92	0.00e+00	1019.00
IUUC-Lpe-051105	Leersia perrieri	85.87	0.00e+00	987.00
IUUC-Mtr-057764	Medicago truncatula	49.17	8.00e-147	513.00
IUUC-Mac-065609	Musa acuminata	50.17	7.00e-154	536.00
IUUC-Oba-075480	Oryza barthii	85.05	0.00e+00	934.00
IUUC-Obr-076773	Oryza brachyantha	82.12	3.00e-146	510.00
IUUC-Ogl-077156	Oryza glaberrima	82.59	0.00e+00	1035.00
IUUC-Ogu-078640	Oryza glumaepatula	81.73	0.00e+00	1042.00
IUUC-Oin-079253	Oryza indica	79.26	0.00e+00	994.00
IUUC-Olo-080903	Oryza longistaminata	85.05	0.00e+00	932.00
IUUC-Ome-081982	Oryza meridionalis	82.30	0.00e+00	1035.00
IUUC-Oni-082824	Oryza nivara	81.73	0.00e+00	1042.00
IUUC-Opu-083758	Oryza punctata	85.26	0.00e+00	1024.00
IUUC-Oru-084718	Oryza rufipogon	81.73	0.00e+00	1042.00
IUUC-Osa-085662	Oryza sativa	84.51	0.00e+00	979.00
IUUC-Pop-099239	Populus trichocarpa	46.99	4.00e-145	507.00
IUUC-Ppe-101890	Prunus persica	49.77	5.00e-143	500.00
IUUC-Sit-110022	Setaria italica	93.20	0.00e+00	1099.00
IUUC-Sly-111463	Solanum lycopersicum	45.99	1.00e-140	493.00
IUUC-Stu-111976	Solanum tuberosum	47.05	1.00e-140	493.00
IUUC-Ssc-115592	Sus scrofa	21.59	3.00e-07	48.50
IUUC-Tca-121221	Theobroma cacao	50.31	1.00e-160	559.00
IUUC-Tae-124437	Triticum aestivum	82.58	0.00e+00	1034.00
IUUC-Tur-126627	Triticum urartu	85.21	0.00e+00	858.00
IUUC-Vvi-131159	Vitis vinifera	46.94	2.00e-139	488.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence