iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	HINT	Mentha
Protein 3D Structure
PDB	MMDB
Post-translational Modifications (PTMs)
dbPTM	UniProt
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
ULD/UDP/UFD/MUB	MUB	25320573

Classification

Family	E-value	Score	Start	End
ULD/UDP/UBQ/UBQ_Other	1.60e-10	41.6	8	76

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UBQ/UBQ_Other

   S: 2    qvtvksldgs.eltlkvnpsdtVaeLKeki.....ekklgip.pe.qqrLiykGkiLeddktLadyglk 62
            ++++ +dgs +++++++ ++tV  LK+++     ++k+ +p    +++Li +GkiLe++kt+++++ +
   Q: 8    DIKFRLYDGSdIGPFRYSAASTVDFLKQRVvsdwpKGKTVVPkGInEVKLISSGKILENNKTVGQCKTP 76
           689**************************************98656********************875 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Ubiquitous, but three fold higher expression in senescing leaves.

Protein Sequence
(Fasta)

MPEEESIDIK FRLYDGSDIG PFRYSAASTV DFLKQRVVSD WPKGKTVVPK GINEVKLISS 60
GKILENNKTV GQCKTPFGDI AGGVIVMHVV VQPSLAKSKT EKKVDKAPKA VICTCTIL 118

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACGAATTATA TTATTGTAGA AGAAGAAAAA AAAAGTATGG TGGGAAGTGG GAACAGTTAG 60
ACAGGTAAAT TCGAATAAAA CGACAGCGTT TTTGGCTAGG ACAATAAAAG TTGAAGACGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0002--3D-structure
KW-1003--Cell membrane
KW-0181--Complete proteome
KW-0449--Lipoprotein
KW-0472--Membrane
KW-0488--Methylation
KW-0564--Palmitate
KW-0636--Prenylation
KW-1185--Reference proteome

Interpro

IPR017000--MUB
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom

PROSITE

PS50053--UBIQUITIN_2

Gene Ontology

GO:0005886--C:plasma membrane

KEGG

ath:AT4G24990

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002026	Ailuropoda melanoleuca	25.74	2.00e-05	40.00
IUUC-Atr-002633	Amborella trichopoda	61.02	3.00e-43	165.00
IUUC-Apl-003995	Anas platyrhynchos	27.66	1.00e-05	40.40
IUUC-Aca-004268	Anolis carolinensis	27.66	2.00e-05	40.40
IUUC-Aly-006205	Arabidopsis lyrata	98.31	7.00e-65	237.00
IUUC-Ame-010872	Astyanax mexicanus	25.42	2.00e-05	40.40
IUUC-Bta-012365	Bos taurus	25.74	2.00e-05	40.00
IUUC-Bol-015540	Brassica oleracea	92.37	2.00e-54	204.00
IUUC-Bra-017814	Brassica rapa	92.37	2.00e-54	202.00
IUUC-Cja-019729	Callithrix jacchus	25.74	2.00e-05	40.00
IUUC-Cfa-020662	Canis familiaris	24.58	2.00e-05	40.40
IUUC-Cpo-022324	Cavia porcellus	25.74	1.00e-05	41.20
IUUC-Csa-024065	Chlorocebus sabaeus	25.74	2.00e-05	40.00
IUUC-Cho-025062	Choloepus hoffmanni	34.69	1.00e-03	33.90
IUUC-Cin-025171	Ciona intestinalis	22.64	1.00e-03	34.30
IUUC-Dre-027757	Danio rerio	23.08	6.00e-05	38.50
IUUC-Dno-029261	Dasypus novemcinctus	25.74	2.00e-05	40.00
IUUC-Dor-030666	Dipodomys ordii	25.74	2.00e-05	40.00
IUUC-Dme-031839	Drosophila melanogaster	26.05	4.00e-03	35.00
IUUC-Eca-034040	Equus caballus	25.74	2.00e-05	40.00
IUUC-Fca-036059	Felis catus	25.74	2.00e-05	40.00
IUUC-Fal-037503	Ficedula albicollis	27.66	2.00e-05	40.40
IUUC-Gmo-038922	Gadus morhua	23.00	5.00e-04	35.40
IUUC-Gga-040538	Gallus gallus	25.64	1.00e-05	40.80
IUUC-Gac-041706	Gasterosteus aculeatus	24.47	2.00e-03	34.70
IUUC-Gma-042699	Glycine max	80.51	3.00e-49	185.00
IUUC-Ggo-045231	Gorilla gorilla	25.74	2.00e-05	40.00
IUUC-Hsa-046393	Homo sapiens	25.74	2.00e-05	40.00
IUUC-Hvu-047429	Hordeum vulgare	67.27	9.00e-39	151.00
IUUC-Itr-048625	Ictidomys tridecemlineatus	25.74	2.00e-05	40.00
IUUC-Lch-050196	Latimeria chalumnae	26.60	4.00e-05	39.30
IUUC-Lpe-051457	Leersia perrieri	63.72	2.00e-38	150.00
IUUC-Loc-051941	Lepisosteus oculatus	26.60	2.00e-04	37.40
IUUC-Laf-054253	Loxodonta africana	25.74	2.00e-05	40.00
IUUC-Mcc-055067	Macaca mulatta	25.64	7.00e-06	41.60
IUUC-Mtr-057897	Medicago truncatula	86.32	8.00e-47	177.00
IUUC-Mla-058877	Melampsora laricipopulina	25.97	4.00e-05	40.80
IUUC-Mga-059213	Meleagris gallopavo	27.66	2.00e-05	40.40
IUUC-Mmr-061517	Microcebus murinus	25.74	2.00e-05	40.40
IUUC-Mdo-062989	Monodelphis domestica	27.66	2.00e-05	40.40
IUUC-Mmu-064126	Mus musculus	25.74	2.00e-05	40.00
IUUC-Mac-064727	Musa acuminata	63.56	7.00e-46	174.00
IUUC-Mpu-066562	Mustela putorius furo	25.74	2.00e-05	40.00
IUUC-Mlu-067004	Myotis lucifugus	25.74	2.00e-05	40.00
IUUC-Nle-069066	Nomascus leucogenys	25.74	2.00e-05	40.00
IUUC-Opr-071116	Ochotona princeps	27.38	1.00e-04	37.00
IUUC-Ont-071465	Oreochromis niloticus	26.60	9.00e-05	37.70
IUUC-Oan-072889	Ornithorhynchus anatinus	27.66	2.00e-05	40.40
IUUC-Ocu-074206	Oryctolagus cuniculus	25.74	2.00e-05	40.00
IUUC-Oba-075814	Oryza barthii	60.68	5.00e-35	139.00
IUUC-Obr-076654	Oryza brachyantha	65.45	9.00e-38	148.00
IUUC-Ogl-077533	Oryza glaberrima	65.14	1.00e-37	147.00
IUUC-Olo-080522	Oryza longistaminata	67.78	4.00e-31	125.00
IUUC-Ome-081175	Oryza meridionalis	67.78	2.00e-31	127.00
IUUC-Oni-082362	Oryza nivara	60.68	5.00e-35	139.00
IUUC-Opu-083320	Oryza punctata	65.14	2.00e-37	147.00
IUUC-Oru-085174	Oryza rufipogon	60.68	5.00e-35	139.00
IUUC-Osa-086146	Oryza sativa	65.14	1.00e-37	147.00
IUUC-Ola-086589	Oryzias latipes	25.00	2.00e-04	37.00
IUUC-Oga-088252	Otolemur garnettii	25.74	2.00e-05	40.00
IUUC-Oar-090105	Ovis aries	24.59	9.00e-06	41.20
IUUC-Ptr-090930	Pan troglodytes	25.74	2.00e-05	40.00
IUUC-Pan-092513	Papio anubis	25.74	2.00e-05	40.00
IUUC-Psi-093975	Pelodiscus sinensis	27.66	2.00e-05	40.40
IUUC-Pfo-096368	Poecilia formosa	24.59	5.00e-06	42.40
IUUC-Pab-098193	Pongo abelii	25.74	2.00e-05	40.00
IUUC-Pop-100036	Populus trichocarpa	76.27	6.00e-56	207.00
IUUC-Pca-100660	Procavia capensis	25.74	2.00e-05	40.00
IUUC-Ppe-101161	Prunus persica	77.12	5.00e-44	168.00
IUUC-Pva-102940	Pteropus vampyrus	25.74	2.00e-05	40.00
IUUC-Rno-105072	Rattus norvegicus	25.74	2.00e-05	40.00
IUUC-Sha-106727	Sarcophilus harrisii	27.66	2.00e-05	40.40
IUUC-Sar-113747	Sorex araneus	26.00	3.00e-05	39.70
IUUC-Sre-115204	Sporisorium reilianum	23.61	4.00e-03	33.90
IUUC-Ssc-115456	Sus scrofa	25.74	2.00e-05	40.40
IUUC-Tgu-117007	Taeniopygia guttata	27.66	1.00e-05	40.40
IUUC-Tru-118070	Takifugu rubripes	25.00	1.00e-04	37.40
IUUC-Tsy-119287	Tarsius syrichta	29.69	2.00e-04	36.60
IUUC-Tni-120428	Tetraodon nigroviridis	25.00	2.00e-04	37.00
IUUC-Tca-121194	Theobroma cacao	78.81	2.00e-56	209.00
IUUC-Tae-123903	Triticum aestivum	66.36	1.00e-38	150.00
IUUC-Tbe-127437	Tupaia belangeri	30.30	2.00e-04	37.00
IUUC-Ttr-128237	Tursiops truncatus	25.74	2.00e-05	40.00
IUUC-Vpa-130387	Vicugna pacos	25.74	3.00e-05	39.70
IUUC-Vvi-131536	Vitis vinifera	79.46	3.00e-53	198.00
IUUC-Xtr-132749	Xenopus tropicalis	25.74	6.00e-05	38.90

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence