iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Dre-028209

Ensembl Protein ID

ENSDARP00000123746.1

UniProt Accession

F1QHZ1; F1QHZ1_DANRE

Genbank Protein ID

ENSDARP00000123746

Protein Name

RAD23 homolog A, nucleotide excision repair protein a

Genbank Nucleotide ID

CABZ01035172

Gene Name

rad23aa

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000020001.8	ENSDART00000149939.1	ENSDARP00000123746.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	2.60e-17	63.3	163	199
ULD/UDP/UBQ/UBQ_PIM	3.20e-25	88.8	1	79

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 5    dkleqlveMGFdreealqaLraannnleaAveyLldg 41
            +l ++++MG++r++++ aL a++nn+ +AveyLl+g
   Q: 163  AMLTNIMSMGYERDKVVAALKASYNNPHRAVEYLLNG 199
           68999******************************86 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksks 76
           m++t+ktl++++++++++ ++tv++lKeki++e+g   +p++ qkLIyaGkiL+Ddt+++e++i+++++v+++v+k+ks
   Q: 1    MQITLKTLQQQTIQIDIDDEQTVKALKEKIEAEKGrdsFPVAGQKLIYAGKILQDDTPIKEYKIDEKNFVVVMVSKTKS 79
           99*************************************************************************9985 PP

Organism

Danio rerio

Protein Sequence
(Fasta)

MQITLKTLQQ QTIQIDIDDE QTVKALKEKI EAEKGRDSFP VAGQKLIYAG KILQDDTPIK 60
EYKIDEKNFV VVMVSKTKSP GTSAAPSEPS RSVAASSSSS SSSPPPPPPP APAPAAIPFT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCACCACCGA AGAAATGACG CAGACAGGCG TGTTTTTAGC CTGTTAGCCA GAGAGCTACA 60
TCTTTTAACG TCCATTAACT GTCCTTGGCT TTCAAACTCA AACATTTCCT CGGGACATAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002756	Amborella trichopoda	35.43	2.00e-53	203.00
IUUC-Aca-004704	Anolis carolinensis	61.69	2.00e-82	299.00
IUUC-Ame-011342	Astyanax mexicanus	69.92	2.00e-100	359.00
IUUC-Bgr-012056	Blumeria graminis	33.74	5.00e-30	125.00
IUUC-Bol-016300	Brassica oleracea	33.16	6.00e-50	191.00
IUUC-Cin-025741	Ciona intestinalis	43.28	5.00e-39	154.00
IUUC-Csv-025823	Ciona savignyi	43.23	8.00e-43	167.00
IUUC-Cme-027260	Cyanidioschyzon merolae	28.54	3.00e-26	113.00
IUUC-Dno-030017	Dasypus novemcinctus	65.62	3.00e-63	235.00
IUUC-Dme-032027	Drosophila melanogaster	37.21	6.00e-62	231.00
IUUC-Fox-037960	Fusarium oxysporum	36.45	3.00e-22	99.80
IUUC-Fso-038107	Fusarium solani	36.32	8.00e-26	111.00
IUUC-Gmo-038528	Gadus morhua	72.85	5.00e-74	271.00
IUUC-Gga-040133	Gallus gallus	71.43	1.00e-57	216.00
IUUC-Gac-042298	Gasterosteus aculeatus	61.93	1.00e-96	346.00
IUUC-Gma-044245	Glycine max	34.95	5.00e-50	191.00
IUUC-Itr-047875	Ictidomys tridecemlineatus	56.67	1.00e-95	343.00
IUUC-Lch-050563	Latimeria chalumnae	52.48	4.00e-78	285.00
IUUC-Loc-051758	Lepisosteus oculatus	63.53	9.00e-91	327.00
IUUC-Lma-053328	Leptosphaeria maculans	49.35	1.00e-12	64.30
IUUC-Meu-056459	Macropus eugenii	71.30	1.00e-70	260.00
IUUC-Mor-057287	Magnaporthe oryzae	38.81	2.00e-23	103.00
IUUC-Mtr-058239	Medicago truncatula	32.66	7.00e-46	177.00
IUUC-Mmr-060819	Microcebus murinus	55.67	2.00e-94	339.00
IUUC-Mdo-062742	Monodelphis domestica	60.83	6.00e-102	363.00
IUUC-Mlu-067787	Myotis lucifugus	55.41	2.00e-92	332.00
IUUC-Oan-073572	Ornithorhynchus anatinus	64.09	5.00e-99	354.00
IUUC-Ocu-074968	Oryctolagus cuniculus	69.72	6.00e-38	152.00
IUUC-Ogl-077067	Oryza glaberrima	32.84	3.00e-47	182.00
IUUC-Oin-079203	Oryza indica	33.17	6.00e-48	184.00
IUUC-Olo-080559	Oryza longistaminata	33.84	6.00e-47	181.00
IUUC-Oni-082812	Oryza nivara	35.11	2.00e-47	182.00
IUUC-Oru-084942	Oryza rufipogon	35.31	2.00e-43	170.00
IUUC-Osa-085951	Oryza sativa	33.17	6.00e-48	184.00
IUUC-Olu-087843	Ostreococcus lucimarinus	38.40	6.00e-37	148.00
IUUC-Psi-093347	Pelodiscus sinensis	58.77	4.00e-37	149.00
IUUC-Ppa-095964	Physcomitrella patens	35.48	4.00e-32	132.00
IUUC-Pfo-096607	Poecilia formosa	63.51	4.00e-96	345.00
IUUC-Ptt-103717	Puccinia triticina	46.27	1.00e-26	114.00
IUUC-Sha-106918	Sarcophilus harrisii	70.00	7.00e-68	251.00
IUUC-Spo-108298	Schizosaccharomyces pombe	34.67	3.00e-50	192.00
IUUC-Stu-112054	Solanum tuberosum	36.14	4.00e-53	201.00
IUUC-Tni-120493	Tetraodon nigroviridis	68.38	4.00e-80	291.00
IUUC-Tae-125346	Triticum aestivum	34.55	2.00e-46	179.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence