iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Smo-109374

Ensembl Protein ID

EFJ10683

UniProt Accession

D8QX02; D8QX02_SELML

Genbank Protein ID

EFJ10683.1; EFJ35730.1

Protein Name

Eukaryotic translation initiation factor 3 subunit F; eIF-3-epsilon

Genbank Nucleotide ID

GL377652; GL377568

Gene Name

SELMODRAFT_127524; SELMODRAFT_79764

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SELMODRAFT_127524	EFJ10683	EFJ10683

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/JAMM	44.28	3.00e-67	252.00	IUUC-Hsa-046860

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Selaginella moellendorffii

Functional Description
(View)

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Protein Sequence
(Fasta)

MPSGPTAVVA KLHPTVLFNI CDSYIRRNDQ QDRVIGTLLG SISSDGTIDI RNSYAVPHNE 60
SSDQVAVDID YHRSMFELHQ RVNPKEVIIG WYSTSPGVTG SDALIQDFYA RETSNPIHLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCCCTCCG GGCCGACGGC GGTCGTTGCC AAGCTCCATC CGACGGTCCT CTTCAACATC 60
TGCGATTCCT ACATTCGCCG CAACGATCAG CAAGATCGGG TGATTGGGAC GCTGCTGGGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C

Pfam

PF01398--JAB
PF13012--MitMem_reg

SMART

SM00232--JAB_MPN

Gene Ontology

GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0005852--C:eukaryotic translation initiation factor 3 complex
GO:0003743--F:translation initiation factor activity
GO:0001731--P:formation of translation preinitiation complex
GO:0006446--P:regulation of translational initiation

KEGG

smo:SELMODRAFT_127524; smo:SELMODRAFT_79764

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001150	Aegilops tauschii	55.82	1.00e-89	322.00
IUUC-Aml-001527	Ailuropoda melanoleuca	44.57	2.00e-68	251.00
IUUC-Atr-002686	Amborella trichopoda	72.22	3.00e-101	360.00
IUUC-Apl-003977	Anas platyrhynchos	42.99	6.00e-55	206.00
IUUC-Aca-004335	Anolis carolinensis	44.87	3.00e-69	254.00
IUUC-Aly-005945	Arabidopsis lyrata	62.64	2.00e-95	341.00
IUUC-Ath-007045	Arabidopsis thaliana	62.26	8.00e-94	335.00
IUUC-Acl-008365	Aspergillus clavatus	38.01	1.00e-52	199.00
IUUC-Afl-008742	Aspergillus flavus	38.36	5.00e-52	197.00
IUUC-Afu-009030	Aspergillus fumigatus	37.67	2.00e-52	198.00
IUUC-Ani-009212	Aspergillus nidulans	38.83	2.00e-51	195.00
IUUC-Ang-009712	Aspergillus niger	39.04	6.00e-53	200.00
IUUC-Aor-009885	Aspergillus oryzae	38.36	4.00e-53	201.00
IUUC-Ate-010315	Aspergillus terreus	38.01	8.00e-51	193.00
IUUC-Ame-010801	Astyanax mexicanus	34.03	1.00e-31	129.00
IUUC-Bgr-011982	Blumeria graminis	36.59	2.00e-46	178.00
IUUC-Bta-012804	Bos taurus	43.91	3.00e-68	251.00
IUUC-Bci-013891	Botrytis cinerea	36.00	1.00e-39	156.00
IUUC-Bdi-014328	Brachypodium distachyon	59.27	2.00e-93	334.00
IUUC-Bol-015446	Brassica oleracea	63.06	2.00e-98	350.00
IUUC-Bra-016862	Brassica rapa	63.06	4.00e-98	350.00
IUUC-Cel-018171	Caenorhabditis elegans	30.31	2.00e-34	138.00
IUUC-Cja-019335	Callithrix jacchus	44.28	7.00e-69	253.00
IUUC-Cfa-020138	Canis familiaris	44.19	5.00e-68	250.00
IUUC-Cpo-022109	Cavia porcellus	39.78	4.00e-55	207.00
IUUC-Cre-022664	Chlamydomonas reinhardtii	46.81	1.00e-74	271.00
IUUC-Csa-023994	Chlorocebus sabaeus	44.28	7.00e-69	253.00
IUUC-Cho-024351	Choloepus hoffmanni	35.06	2.00e-42	165.00
IUUC-Cin-025801	Ciona intestinalis	39.39	3.00e-56	211.00
IUUC-Csv-025805	Ciona savignyi	39.77	7.00e-56	209.00
IUUC-Cgl-026643	Colletotrichum gloeosporioides	33.46	2.00e-42	165.00
IUUC-Cne-026868	Cryptococcus neoformans	32.35	1.00e-29	122.00
IUUC-Cme-027328	Cyanidioschyzon merolae	25.79	3.00e-22	98.60
IUUC-Dre-028085	Danio rerio	43.70	7.00e-67	246.00
IUUC-Dno-030099	Dasypus novemcinctus	44.57	4.00e-68	251.00
IUUC-Dor-030324	Dipodomys ordii	41.20	1.00e-57	216.00
IUUC-Dse-031314	Dothistroma septosporum	39.64	3.00e-52	197.00
IUUC-Dme-031926	Drosophila melanogaster	37.83	7.00e-55	206.00
IUUC-Ete-032569	Echinops telfairi	41.64	1.00e-61	229.00
IUUC-Eca-033502	Equus caballus	41.26	9.00e-62	229.00
IUUC-Eeu-034883	Erinaceus europaeus	37.91	2.00e-31	127.00
IUUC-Fca-035873	Felis catus	44.57	2.00e-68	252.00
IUUC-Fal-036921	Ficedula albicollis	44.15	8.00e-68	249.00
IUUC-Fox-037765	Fusarium oxysporum	31.41	1.00e-34	139.00
IUUC-Fso-038240	Fusarium solani	31.41	4.00e-36	144.00
IUUC-Gmo-038864	Gadus morhua	44.44	2.00e-67	247.00
IUUC-Ggr-039862	Gaeumannomyces graminis	31.86	5.00e-36	144.00
IUUC-Gga-040952	Gallus gallus	43.87	2.00e-68	251.00
IUUC-Gac-041677	Gasterosteus aculeatus	45.79	6.00e-70	256.00
IUUC-Gma-043061	Glycine max	65.41	7.00e-94	335.00
IUUC-Ggo-045591	Gorilla gorilla	44.28	6.00e-69	253.00
IUUC-Hsa-046860	Homo sapiens	44.28	6.00e-69	253.00
IUUC-Hvu-047410	Hordeum vulgare	63.70	3.00e-55	206.00
IUUC-Itr-048211	Ictidomys tridecemlineatus	44.94	8.00e-69	253.00
IUUC-Lch-049410	Latimeria chalumnae	40.48	6.00e-42	162.00
IUUC-Lpe-051102	Leersia perrieri	63.18	3.00e-96	343.00
IUUC-Loc-052016	Lepisosteus oculatus	41.11	2.00e-54	204.00
IUUC-Lma-053157	Leptosphaeria maculans	38.32	7.00e-50	189.00
IUUC-Laf-054568	Loxodonta africana	44.28	1.00e-68	252.00
IUUC-Mcc-054613	Macaca mulatta	44.28	7.00e-69	253.00
IUUC-Meu-056832	Macropus eugenii	29.67	6.00e-27	112.00
IUUC-Mor-057104	Magnaporthe oryzae	34.01	2.00e-37	149.00
IUUC-Mtr-058445	Medicago truncatula	63.91	8.00e-106	375.00
IUUC-Mla-059038	Melampsora laricipopulina	34.03	3.00e-38	151.00
IUUC-Mga-059548	Meleagris gallopavo	42.73	2.00e-57	214.00
IUUC-Mvi-060520	Microbotryum violaceum	29.05	5.00e-26	110.00
IUUC-Mdo-062376	Monodelphis domestica	43.45	5.00e-67	246.00
IUUC-Mmu-063254	Mus musculus	44.57	8.00e-68	249.00
IUUC-Mac-065635	Musa acuminata	62.37	4.00e-98	350.00
IUUC-Mpu-066314	Mustela putorius furo	44.57	2.00e-68	251.00
IUUC-Mlu-067512	Myotis lucifugus	44.15	4.00e-68	250.00
IUUC-Nfi-068262	Neosartorya fischeri	37.67	2.00e-52	198.00
IUUC-Ncr-068872	Neurospora crassa	31.52	7.00e-38	150.00
IUUC-Nle-070118	Nomascus leucogenys	44.57	2.00e-68	252.00
IUUC-Opr-071228	Ochotona princeps	43.23	2.00e-57	214.00
IUUC-Ont-072600	Oreochromis niloticus	45.56	5.00e-70	256.00
IUUC-Oan-073584	Ornithorhynchus anatinus	41.85	5.00e-57	213.00
IUUC-Ocu-074542	Oryctolagus cuniculus	44.57	3.00e-68	251.00
IUUC-Oba-075923	Oryza barthii	62.41	5.00e-97	346.00
IUUC-Obr-076313	Oryza brachyantha	63.57	2.00e-95	341.00
IUUC-Ogl-076932	Oryza glaberrima	62.41	5.00e-97	346.00
IUUC-Ogu-078152	Oryza glumaepatula	62.41	5.00e-97	346.00
IUUC-Oin-079528	Oryza indica	62.41	5.00e-97	346.00
IUUC-Olo-080401	Oryza longistaminata	62.41	5.00e-97	346.00
IUUC-Ome-081553	Oryza meridionalis	62.03	1.00e-96	345.00
IUUC-Oni-082090	Oryza nivara	61.48	4.00e-97	346.00
IUUC-Opu-083583	Oryza punctata	63.95	7.00e-96	342.00
IUUC-Oru-084492	Oryza rufipogon	62.41	5.00e-97	346.00
IUUC-Osa-085383	Oryza sativa	62.41	5.00e-97	346.00
IUUC-Ola-086835	Oryzias latipes	44.81	8.00e-69	252.00
IUUC-Olu-087716	Ostreococcus lucimarinus	36.98	2.00e-44	171.00
IUUC-Oga-088886	Otolemur garnettii	44.94	3.00e-69	254.00
IUUC-Oar-090079	Ovis aries	43.91	2.00e-68	251.00
IUUC-Ptr-091457	Pan troglodytes	44.28	7.00e-69	253.00
IUUC-Pan-092317	Papio anubis	41.85	4.00e-39	153.00
IUUC-Psi-093129	Pelodiscus sinensis	42.62	2.00e-57	214.00
IUUC-Pma-094488	Petromyzon marinus	42.22	3.00e-67	247.00
IUUC-Pno-095049	Phaeosphaeria nodorum	37.88	6.00e-52	197.00
IUUC-Ppa-095341	Physcomitrella patens	74.55	1.00e-128	451.00
IUUC-Pfo-096286	Poecilia formosa	44.81	3.00e-69	254.00
IUUC-Pab-097765	Pongo abelii	44.28	7.00e-69	253.00
IUUC-Pop-099131	Populus trichocarpa	66.42	2.00e-105	374.00
IUUC-Pca-100524	Procavia capensis	35.68	2.00e-38	151.00
IUUC-Ppe-101934	Prunus persica	65.79	4.00e-107	379.00
IUUC-Pva-102577	Pteropus vampyrus	44.91	7.00e-69	253.00
IUUC-Pgr-103521	Puccinia graminis	34.19	1.00e-41	162.00
IUUC-Pte-104304	Pyrenophora teres	38.23	2.00e-52	198.00
IUUC-Pyt-104563	Pyrenophora triticirepentis	38.57	1.00e-52	199.00
IUUC-Rno-105717	Rattus norvegicus	44.57	3.00e-68	251.00
IUUC-Sha-107190	Sarcophilus harrisii	43.08	1.00e-63	236.00
IUUC-Sja-107918	Schizosaccharomyces japonicus	39.65	6.00e-50	189.00
IUUC-Spo-108355	Schizosaccharomyces pombe	41.96	3.00e-53	201.00
IUUC-Sit-110119	Setaria italica	62.64	5.00e-98	349.00
IUUC-Sly-111570	Solanum lycopersicum	63.33	5.00e-90	323.00
IUUC-Stu-112308	Solanum tuberosum	66.92	2.00e-101	361.00
IUUC-Sar-113515	Sorex araneus	37.89	4.00e-15	73.60
IUUC-Sbi-114605	Sorghum bicolor	62.64	8.00e-98	349.00
IUUC-Sre-114906	Sporisorium reilianum	43.82	9.00e-55	206.00
IUUC-Tgu-117087	Taeniopygia guttata	43.17	3.00e-57	213.00
IUUC-Tru-117700	Takifugu rubripes	45.56	2.00e-71	261.00
IUUC-Tni-120470	Tetraodon nigroviridis	44.81	2.00e-69	254.00
IUUC-Tca-121109	Theobroma cacao	66.54	3.00e-93	333.00
IUUC-Tre-122095	Trichoderma reesei	32.01	1.00e-35	142.00
IUUC-Tvi-122580	Trichoderma virens	32.01	5.00e-35	140.00
IUUC-Tae-125129	Triticum aestivum	60.90	7.00e-96	342.00
IUUC-Tur-126658	Triticum urartu	54.41	1.00e-86	311.00
IUUC-Tme-127043	Tuber melanosporum	39.72	8.00e-54	202.00
IUUC-Tbe-127927	Tupaia belangeri	44.57	2.00e-68	252.00
IUUC-Ttr-129231	Tursiops truncatus	44.19	5.00e-68	250.00
IUUC-Uma-129578	Ustilago maydis	43.07	5.00e-54	203.00
IUUC-Vda-129730	Verticillium dahliae	34.89	5.00e-42	164.00
IUUC-Vvi-130968	Vitis vinifera	68.77	1.00e-105	374.00
IUUC-Xtr-132203	Xenopus tropicalis	43.33	6.00e-67	246.00
IUUC-Xma-133972	Xiphophorus maculatus	44.81	1.00e-68	251.00
IUUC-Yli-134553	Yarrowia lipolytica	36.20	7.00e-39	153.00
IUUC-Zma-134941	Zea mays	62.26	9.00e-90	322.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence