iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	PINA	Mentha
Post-translational Modifications (PTMs)
dbPPT	dbPTM
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
UBD/Alpha-Helix/UBA	UBA	17190830

Classification

Family	E-value	Score	Start	End
UBD/Alpha-Helix/UBA	7.90e-05	23.5	5	44
ULD/UDP/UFD/UBX	2.30e-12	48.1	346	418

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 2    ededkleqlve.MGFdreealqaLraannnleaAveyLld 40
           ++e +++ ++e +  +reea   L+++ +nl+aAv  +ld
   Q: 5    TNENLINSFIEiTSSSREEANFFLESHTWNLDAAVSTFLD 44
           57899******9999*********************9997 PP

ULD/UDP/UFD/UBX

   S: 4    eqatlqiRlpdGkrlvrkFpssttleqiyqfveyllvessdpFeLvs.pfPrrtlkpeehmstlqeagLvpsgsl 77
           +++ +q+Rl+dG rlv +F+  +t+++++ f++ ++   s++++L++ +fP ++l++ ++  t+++ag+++  ++
   Q: 346  PTTSIQLRLADGTRLVSRFNNHHTVRDVRGFIDASRPGGSKEYQLLTmGFPPKQLTELDQ--TIEQAGIANAVVI 418
           6899*****************************9999999999988747***********..********99887 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MATETNENLI NSFIEITSSS REEANFFLES HTWNLDAAVS TFLDNDAAAA AEPNPTGPPP 60
PSSTIAGAQS PSQSHSPDYT PSETSPSPSR SRSASPSSRA APYGLRSRGG AGENKETENP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGAAGTTTGA CGGTGAAAAA AGGAAAATAT TTACATATAT ATAGTAAAAT TAAAATAGTA 60
GAAAGAAAAA AATCAGAAAG CTACGAAAGA AAAAAAAAAC AATCTAGCAA CAGAAGAAGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0833--Ubl conjugation pathway

Interpro

IPR012989--SEP_domain
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR001012--UBX_dom

PROSITE

PS51399--SEP
PS50033--UBX

Pfam

PF08059--SEP
PF00789--UBX

SMART

SM00553--SEP
SM00166--UBX

Gene Ontology

GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0051117--F:ATPase binding
GO:0043130--F:ubiquitin binding
GO:0007030--P:Golgi organization
GO:0061025--P:membrane fusion
GO:0031468--P:nuclear envelope reassembly
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT4G15410

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005688	Arabidopsis lyrata	84.62	8.00e-165	573.00
IUUC-Ago-007933	Ashbya gossypii	25.97	1.00e-14	73.60
IUUC-Ani-009398	Aspergillus nidulans	33.33	2.00e-29	122.00
IUUC-Bol-015660	Brassica oleracea	79.54	6.00e-129	453.00
IUUC-Bra-017637	Brassica rapa	78.88	2.00e-127	447.00
IUUC-Cho-024683	Choloepus hoffmanni	31.58	2.00e-12	65.10
IUUC-Cgl-026628	Colletotrichum gloeosporioides	31.79	1.00e-16	80.50
IUUC-Cne-026798	Cryptococcus neoformans	34.31	2.00e-27	116.00
IUUC-Cme-027347	Cyanidioschyzon merolae	32.48	1.00e-24	105.00
IUUC-Dse-031256	Dothistroma septosporum	31.68	3.00e-25	108.00
IUUC-Gma-044294	Glycine max	54.35	5.00e-103	367.00
IUUC-Mla-059077	Melampsora laricipopulina	30.66	3.00e-31	129.00
IUUC-Pop-098970	Populus trichocarpa	54.48	4.00e-102	363.00
IUUC-Ppe-101417	Prunus persica	53.76	1.00e-103	369.00
IUUC-Tca-121370	Theobroma cacao	53.32	6.00e-99	353.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence