iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pab-098174

Ensembl Protein ID

ENSPPYP00000008928.1

UniProt Accession

H2NSL6; H2NSL6_PONAB

Genbank Protein ID

ENSPPYP00000008928

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

ABGA01205820

Gene Name

CHD3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSPPYG00000007940.1	ENSPPYT00000009294.1	ENSPPYP00000008928.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	5.60e-16	58.6	341	386

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           ++C vC++gge    ++ C+ C +++H  Cl ++  +  p+ + w Cp C++
   Q: 341  DYCEVCQQGGE----IILCDTCPRAYHLVCLDPE-LDRAPEGK-WSCPHCEK 386
           79*********....9******************.*******7.******86 PP

Organism

Pongo abelii

Protein Sequence
(Fasta)

MKEADTVILW ARSKNDQLRI SFPPGLCWGD RMPDSEEEFG SERYDYREKS ESGGSEYGTG 60
PGLKRITKHR EKNEKNTKRR KKGEGDGGQK QVEQKSSATL LLTWGLEDVE HVFSEEDYHT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAAGGAGG CAGACACTGT GATCCTGTGG GCAAGAAGTA AAAATGACCA GCTGAGGATT 60
TCTTTTCCTC CAGGACTGTG TTGGGGTGAC AGGATGCCTG GTAATTATCC GAGGAAATGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR028722--CHD3
IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR023779--Chromodomain_CS
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR009071--HMG_box_dom
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS00598--CHROMO_1
PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N

SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD

Gene Ontology

GO:0005813--C:centrosome
GO:0005737--C:cytoplasm
GO:0005730--C:nucleolus
GO:0016581--C:NuRD complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0003723--F:RNA binding
GO:0008270--F:zinc ion binding
GO:0051297--P:centrosome organization
GO:0006333--P:chromatin assembly or disassembly
GO:0006355--P:regulation of transcription, DNA-templated
GO:0007051--P:spindle organization

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aca-004560	Anolis carolinensis	79.43	0.00e+00	2561.00
IUUC-Bta-012868	Bos taurus	93.30	0.00e+00	3064.00
IUUC-Cja-019018	Callithrix jacchus	86.50	0.00e+00	2959.00
IUUC-Cfa-021055	Canis familiaris	92.80	0.00e+00	3043.00
IUUC-Cpo-021523	Cavia porcellus	95.13	0.00e+00	3090.00
IUUC-Csa-024136	Chlorocebus sabaeus	96.27	0.00e+00	3020.00
IUUC-Dre-028226	Danio rerio	68.35	0.00e+00	2048.00
IUUC-Dor-030167	Dipodomys ordii	93.22	0.00e+00	2434.00
IUUC-Ete-032757	Echinops telfairi	89.26	0.00e+00	2731.00
IUUC-Eeu-034777	Erinaceus europaeus	85.24	0.00e+00	2443.00
IUUC-Fca-036043	Felis catus	95.13	0.00e+00	3048.00
IUUC-Gmo-038957	Gadus morhua	78.75	0.00e+00	1376.00
IUUC-Gac-041375	Gasterosteus aculeatus	68.41	0.00e+00	2402.00
IUUC-Gma-043999	Glycine max	43.65	0.00e+00	718.00
IUUC-Ggo-045538	Gorilla gorilla	96.58	0.00e+00	3020.00
IUUC-Hsa-045916	Homo sapiens	96.73	0.00e+00	3013.00
IUUC-Itr-048463	Ictidomys tridecemlineatus	95.87	0.00e+00	2946.00
IUUC-Lch-050343	Latimeria chalumnae	76.35	0.00e+00	1949.00
IUUC-Loc-052383	Lepisosteus oculatus	78.25	0.00e+00	1924.00
IUUC-Laf-053870	Loxodonta africana	95.00	0.00e+00	2693.00
IUUC-Mcc-055499	Macaca mulatta	91.46	0.00e+00	2921.00
IUUC-Meu-056292	Macropus eugenii	86.44	0.00e+00	1181.00
IUUC-Mmr-061223	Microcebus murinus	94.66	0.00e+00	3009.00
IUUC-Mdo-062971	Monodelphis domestica	88.39	0.00e+00	2679.00
IUUC-Mmu-063920	Mus musculus	93.48	0.00e+00	2942.00
IUUC-Mpu-065809	Mustela putorius furo	95.10	0.00e+00	2788.00
IUUC-Mlu-067355	Myotis lucifugus	92.71	0.00e+00	3098.00
IUUC-Nle-069842	Nomascus leucogenys	95.61	0.00e+00	2886.00
IUUC-Opr-070960	Ochotona princeps	94.02	0.00e+00	2927.00
IUUC-Ont-072647	Oreochromis niloticus	66.19	0.00e+00	2196.00
IUUC-Oan-072885	Ornithorhynchus anatinus	59.14	0.00e+00	1846.00
IUUC-Ocu-074438	Oryctolagus cuniculus	90.45	0.00e+00	2886.00
IUUC-Oga-088374	Otolemur garnettii	95.44	0.00e+00	3020.00
IUUC-Oar-089784	Ovis aries	90.46	0.00e+00	3010.00
IUUC-Ptr-090799	Pan troglodytes	96.79	0.00e+00	3025.00
IUUC-Ppa-095213	Physcomitrella patens	41.09	0.00e+00	682.00
IUUC-Pca-100829	Procavia capensis	94.70	0.00e+00	2276.00
IUUC-Rno-104884	Rattus norvegicus	93.36	0.00e+00	2821.00
IUUC-Sha-107233	Sarcophilus harrisii	90.11	0.00e+00	2857.00
IUUC-Sly-110976	Solanum lycopersicum	43.93	0.00e+00	717.00
IUUC-Ssc-115751	Sus scrofa	93.51	0.00e+00	3030.00
IUUC-Tru-118648	Takifugu rubripes	73.07	0.00e+00	1992.00
IUUC-Tni-120039	Tetraodon nigroviridis	72.61	0.00e+00	1961.00
IUUC-Tbe-128117	Tupaia belangeri	89.64	0.00e+00	1253.00
IUUC-Vpa-130209	Vicugna pacos	98.14	4.00e-180	626.00
IUUC-Vvi-130849	Vitis vinifera	43.93	0.00e+00	711.00
IUUC-Xtr-132833	Xenopus tropicalis	70.29	0.00e+00	2268.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence