iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	5.20e-07	31.0	468	509

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iC+e++   d++ +lpC+H +h +C q+w     + +k++ CP+C+
   Q: 468  CSICQEEYvdGDEVGTLPCQHKYHVSCAQQW-----LRMKNW-CPICK 509
           ********8855599****************.....788888.****6 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MDGFKGKRTS RPIMPRKASG LVLHENMKKK DDKSVVPICS RIGCSSRVSS TKGDLIDHKA 60
KATVSSFRSP LSGKETVGSS SRSMSGFGGT KKASKVIGRR QLSSLLDMDS SESSSVNEDS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACATATCATT CCGCGATAAC TAGCAACGGT GCCGTTTCAA TAACCTCTCT CATGTCCTTT 60
CGTAACTCAA CGAAACCCAA AATCAACGGC TCAGATCATT CCGACTTCTG TTTCGCCTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0008270--F:zinc ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002613	Amborella trichopoda	56.10	5.00e-49	188.00
IUUC-Aly-006317	Arabidopsis lyrata	90.58	0.00e+00	773.00
IUUC-Bol-016611	Brassica oleracea	64.53	9.00e-118	416.00
IUUC-Gma-043752	Glycine max	44.83	2.00e-97	349.00
IUUC-Hvu-047200	Hordeum vulgare	64.33	9.00e-61	227.00
IUUC-Lpe-051551	Leersia perrieri	65.24	5.00e-65	241.00
IUUC-Mla-058928	Melampsora laricipopulina	34.94	9.00e-10	56.20
IUUC-Ont-072632	Oreochromis niloticus	36.89	9.00e-16	77.00
IUUC-Ogu-077954	Oryza glumaepatula	61.42	6.00e-66	244.00
IUUC-Olo-080304	Oryza longistaminata	61.42	6.00e-66	244.00
IUUC-Oni-082765	Oryza nivara	61.42	7.00e-66	244.00
IUUC-Opu-083134	Oryza punctata	45.58	8.00e-67	247.00
IUUC-Oru-084289	Oryza rufipogon	61.42	6.00e-66	244.00
IUUC-Osa-085712	Oryza sativa	61.42	7.00e-66	244.00
IUUC-Ola-087143	Oryzias latipes	35.92	3.00e-14	72.00
IUUC-Ppa-095313	Physcomitrella patens	56.21	4.00e-49	189.00
IUUC-Pfo-096298	Poecilia formosa	36.89	2.00e-15	75.90
IUUC-Pop-099998	Populus trichocarpa	43.76	2.00e-78	286.00
IUUC-Smo-109387	Selaginella moellendorffii	52.56	3.00e-45	176.00
IUUC-Tru-118756	Takifugu rubripes	36.89	1.00e-15	76.60
IUUC-Tni-120423	Tetraodon nigroviridis	36.89	1.00e-15	76.60
IUUC-Tca-121441	Theobroma cacao	49.36	4.00e-96	344.00
IUUC-Xma-133756	Xiphophorus maculatus	36.89	1.00e-15	77.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence