iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Aly-006159

Ensembl Protein ID

fgenesh1_pm.C_scaffold_2001890

UniProt Accession

D7KWK8; D7KWK8_ARALL

Genbank Protein ID

EFH65521.1

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

GL348714

Gene Name

RAD23B; ARALYDRAFT_316857

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh1_pm.C_scaffold_2001890	fgenesh1_pm.C_scaffold_2001890	fgenesh1_pm.C_scaffold_2001890

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	2.10e-25	88.8	141	183
ULD/UDP/UBQ/UBQ_PIM	8.90e-23	80.7	1	78

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 2    ededkleqlveMG...FdreealqaLraannnleaAveyLldg 41
           ++e++++q++eMG   +d+e++ +aLraa+nn+e+Av+yL++g
   Q: 141  SLEQMVQQIMEMGggsWDKETVTRALRAAYNNPERAVDYLYSG 183
           679*************************************986 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           mkltvktlkg++fe++v ++dt+ ++K++i++++g   +p+ qq LI++Gk+LkD+t+L e+++ ++ +++++++ksk
   Q: 1    MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGknnYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSK 78
           99*************************************************************************997 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKNNYP CGQQLLIHNG KVLKDETSLV 60
ENKVTEEGFL VVMLSKSKTA GSAGQSSVQP ASATTSSTKP ETPSTTQSIA VPASPITAQE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAAGCTCA CCGTTAAAAC TCTCAAGGGC AGTCATTTTG AAATTAGGGT TCTACCCTCC 60
GATACGGTTA GTTCTCGTCT TTTCTACTTT CTTCGTCCAG GCGTTTGCGT AATTTTGCAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

aly:ARALYDRAFT_316857

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000088	Aegilops tauschii	55.87	3.00e-95	341.00
IUUC-Atr-002756	Amborella trichopoda	64.46	3.00e-126	444.00
IUUC-Aca-004704	Anolis carolinensis	35.32	1.00e-42	166.00
IUUC-Ath-006674	Arabidopsis thaliana	83.04	3.00e-164	570.00
IUUC-Afl-008605	Aspergillus flavus	33.85	2.00e-36	145.00
IUUC-Afu-008877	Aspergillus fumigatus	33.33	3.00e-39	155.00
IUUC-Ani-009460	Aspergillus nidulans	36.20	9.00e-37	146.00
IUUC-Aor-010032	Aspergillus oryzae	33.75	1.00e-37	150.00
IUUC-Ate-010458	Aspergillus terreus	39.84	6.00e-34	137.00
IUUC-Ame-011342	Astyanax mexicanus	32.62	1.00e-37	149.00
IUUC-Bgr-012056	Blumeria graminis	33.42	2.00e-32	132.00
IUUC-Bta-012922	Bos taurus	40.82	1.00e-33	136.00
IUUC-Bdi-014355	Brachypodium distachyon	65.77	2.00e-117	414.00
IUUC-Bol-016300	Brassica oleracea	81.25	5.00e-157	546.00
IUUC-Cja-018946	Callithrix jacchus	34.34	6.00e-44	170.00
IUUC-Cpo-021850	Cavia porcellus	34.76	6.00e-52	197.00
IUUC-Csa-023714	Chlorocebus sabaeus	34.37	1.00e-47	183.00
IUUC-Cin-025741	Ciona intestinalis	28.61	3.00e-29	121.00
IUUC-Csv-025823	Ciona savignyi	31.49	3.00e-29	121.00
IUUC-Cne-027056	Cryptococcus neoformans	39.13	8.00e-13	67.40
IUUC-Cme-027260	Cyanidioschyzon merolae	28.40	1.00e-29	123.00
IUUC-Dre-028369	Danio rerio	34.11	5.00e-53	200.00
IUUC-Dno-029543	Dasypus novemcinctus	40.33	6.00e-34	137.00
IUUC-Dme-032027	Drosophila melanogaster	29.77	2.00e-44	172.00
IUUC-Eca-033599	Equus caballus	34.50	3.00e-39	155.00
IUUC-Gmo-038528	Gadus morhua	35.29	9.00e-49	186.00
IUUC-Gga-040544	Gallus gallus	34.51	8.00e-41	160.00
IUUC-Gac-042298	Gasterosteus aculeatus	33.89	3.00e-43	168.00
IUUC-Gma-044245	Glycine max	73.05	5.00e-148	516.00
IUUC-Ggo-045125	Gorilla gorilla	39.68	2.00e-33	135.00
IUUC-Hsa-046519	Homo sapiens	39.68	2.00e-33	135.00
IUUC-Itr-047875	Ictidomys tridecemlineatus	35.46	2.00e-51	195.00
IUUC-Lch-049719	Latimeria chalumnae	35.16	5.00e-51	194.00
IUUC-Lpe-051168	Leersia perrieri	64.11	3.00e-117	413.00
IUUC-Loc-051748	Lepisosteus oculatus	35.79	4.00e-47	181.00
IUUC-Mcc-055860	Macaca mulatta	35.09	3.00e-48	184.00
IUUC-Mtr-058239	Medicago truncatula	67.30	4.00e-131	460.00
IUUC-Mga-060060	Meleagris gallopavo	29.37	2.00e-03	35.80
IUUC-Mmr-061159	Microcebus murinus	39.52	3.00e-33	135.00
IUUC-Mdo-062742	Monodelphis domestica	35.08	5.00e-55	207.00
IUUC-Mmu-063929	Mus musculus	35.95	1.00e-50	192.00
IUUC-Mac-064468	Musa acuminata	63.78	2.00e-123	434.00
IUUC-Mpu-066684	Mustela putorius furo	35.86	1.00e-49	189.00
IUUC-Nfi-068390	Neosartorya fischeri	32.88	2.00e-33	135.00
IUUC-Ncr-068685	Neurospora crassa	32.32	1.00e-36	146.00
IUUC-Opr-070234	Ochotona princeps	44.64	3.00e-09	55.10
IUUC-Oan-073572	Ornithorhynchus anatinus	36.60	4.00e-48	184.00
IUUC-Ocu-074831	Oryctolagus cuniculus	39.34	3.00e-33	135.00
IUUC-Oba-074972	Oryza barthii	63.56	8.00e-117	412.00
IUUC-Obr-076909	Oryza brachyantha	64.53	1.00e-123	435.00
IUUC-Ogl-077067	Oryza glaberrima	60.72	3.00e-123	434.00
IUUC-Ogu-078023	Oryza glumaepatula	58.97	7.00e-106	376.00
IUUC-Oin-079203	Oryza indica	60.36	7.00e-124	436.00
IUUC-Olo-080559	Oryza longistaminata	65.85	1.00e-122	432.00
IUUC-Oni-082812	Oryza nivara	63.29	2.00e-116	411.00
IUUC-Opu-083963	Oryza punctata	60.70	2.00e-111	394.00
IUUC-Oru-084942	Oryza rufipogon	62.10	4.00e-105	374.00
IUUC-Osa-085951	Oryza sativa	60.62	7.00e-124	436.00
IUUC-Ola-086540	Oryzias latipes	36.47	3.00e-32	132.00
IUUC-Olu-087843	Ostreococcus lucimarinus	39.30	3.00e-49	188.00
IUUC-Oga-088023	Otolemur garnettii	39.84	7.00e-34	137.00
IUUC-Oar-090387	Ovis aries	34.95	2.00e-46	179.00
IUUC-Ptr-091165	Pan troglodytes	39.68	2.00e-33	135.00
IUUC-Pno-095064	Phaeosphaeria nodorum	33.16	5.00e-23	101.00
IUUC-Ppa-095654	Physcomitrella patens	57.70	9.00e-106	375.00
IUUC-Pfo-096607	Poecilia formosa	36.80	2.00e-47	182.00
IUUC-Pab-097738	Pongo abelii	34.09	3.00e-43	168.00
IUUC-Pop-099726	Populus trichocarpa	67.37	2.00e-127	448.00
IUUC-Pca-100348	Procavia capensis	33.93	4.00e-46	177.00
IUUC-Ppe-101522	Prunus persica	71.88	2.00e-148	517.00
IUUC-Pva-102412	Pteropus vampyrus	36.13	1.00e-48	186.00
IUUC-Rno-105569	Rattus norvegicus	34.61	1.00e-45	176.00
IUUC-Sha-106918	Sarcophilus harrisii	34.85	4.00e-44	171.00
IUUC-Smo-109129	Selaginella moellendorffii	54.81	3.00e-98	351.00
IUUC-Sit-109813	Setaria italica	60.87	9.00e-113	399.00
IUUC-Sly-111349	Solanum lycopersicum	70.19	2.00e-135	474.00
IUUC-Stu-112306	Solanum tuberosum	70.54	1.00e-125	442.00
IUUC-Sbi-114459	Sorghum bicolor	64.50	2.00e-120	424.00
IUUC-Ssc-115460	Sus scrofa	34.78	9.00e-48	183.00
IUUC-Tgu-116918	Taeniopygia guttata	36.39	6.00e-48	184.00
IUUC-Tni-120493	Tetraodon nigroviridis	37.57	1.00e-49	189.00
IUUC-Tca-121594	Theobroma cacao	73.47	1.00e-138	485.00
IUUC-Tae-123231	Triticum aestivum	66.12	6.00e-121	426.00
IUUC-Tme-127092	Tuber melanosporum	47.45	2.00e-23	102.00
IUUC-Ttr-128464	Tursiops truncatus	40.82	2.00e-33	135.00
IUUC-Vpa-130357	Vicugna pacos	36.54	4.00e-17	81.30
IUUC-Xma-133647	Xiphophorus maculatus	37.09	2.00e-45	176.00
IUUC-Yli-134615	Yarrowia lipolytica	29.95	1.00e-38	152.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence