iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114550

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000769

Gene Name

SORBI_010G000900

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb10g000280	Sb10g000280.1	Sb10g000280.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	4.30e-35	120.4	225	297

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +p+ef+CpIslelM+dPv+++sG+ty+rs+I+kwl+sg+ktcP+t+q l++++l+Pn +l++li +wce+n++
   Q: 225  IPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQLLSHTSLTPNFVLKSLIAQWCEANGI 297
           79********************************************************************986 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MPARVAAEIA ALPEPRGPMR RLCGDLTRRI RLLAPLFQHL QDRGDALLLA DALGAARDLL 60
RAVHDGSKIY QAMQGDAVLQ RFATVNRHIH LALDALPYQT FDMPEEVLEQ VDLVHSQFKR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATCATCGTCT TCCTCCAGCT CCTCTCCTCT CCTCTCCTCT CCTCTCCTTC AGCTGGGTTT 60
GGATTGGTAG CCACCAGGCC ACCGCGTAGA GACGAAAGAG ATAGAGGGAC CTGCGGCAGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

sbi:SORBI_10g000280

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002932	Amborella trichopoda	58.97	0.00e+00	682.00
IUUC-Aly-006103	Arabidopsis lyrata	58.47	0.00e+00	633.00
IUUC-Ath-006994	Arabidopsis thaliana	57.60	0.00e+00	629.00
IUUC-Bdi-014691	Brachypodium distachyon	85.56	0.00e+00	928.00
IUUC-Bol-016160	Brassica oleracea	57.59	0.00e+00	636.00
IUUC-Bra-016727	Brassica rapa	57.26	0.00e+00	635.00
IUUC-Cel-018336	Caenorhabditis elegans	31.85	4.00e-09	57.00
IUUC-Gma-043496	Glycine max	60.20	0.00e+00	700.00
IUUC-Hvu-047272	Hordeum vulgare	81.61	0.00e+00	860.00
IUUC-Itr-048039	Ictidomys tridecemlineatus	30.22	1.00e-09	58.50
IUUC-Lpe-051517	Leersia perrieri	81.92	0.00e+00	937.00
IUUC-Mtr-057651	Medicago truncatula	59.47	0.00e+00	658.00
IUUC-Mac-064891	Musa acuminata	55.85	2.00e-173	601.00
IUUC-Oba-075750	Oryza barthii	82.26	0.00e+00	961.00
IUUC-Obr-076793	Oryza brachyantha	86.01	0.00e+00	903.00
IUUC-Ogl-077380	Oryza glaberrima	82.42	0.00e+00	962.00
IUUC-Ogu-078219	Oryza glumaepatula	82.23	0.00e+00	959.00
IUUC-Oin-079724	Oryza indica	84.86	0.00e+00	988.00
IUUC-Olo-080320	Oryza longistaminata	70.72	0.00e+00	790.00
IUUC-Ome-081932	Oryza meridionalis	82.09	0.00e+00	959.00
IUUC-Oni-082439	Oryza nivara	82.26	0.00e+00	960.00
IUUC-Opu-083837	Oryza punctata	85.02	0.00e+00	990.00
IUUC-Oru-085172	Oryza rufipogon	82.23	0.00e+00	959.00
IUUC-Osa-085991	Oryza sativa	82.12	0.00e+00	959.00
IUUC-Ppa-095383	Physcomitrella patens	47.99	4.00e-153	534.00
IUUC-Pop-099229	Populus trichocarpa	60.96	0.00e+00	687.00
IUUC-Ppe-101965	Prunus persica	56.88	0.00e+00	647.00
IUUC-Sit-110461	Setaria italica	84.53	0.00e+00	928.00
IUUC-Sly-111662	Solanum lycopersicum	60.30	0.00e+00	695.00
IUUC-Stu-111979	Solanum tuberosum	60.30	0.00e+00	694.00
IUUC-Ssc-116061	Sus scrofa	28.44	1.00e-11	65.50
IUUC-Tca-121269	Theobroma cacao	61.08	0.00e+00	692.00
IUUC-Tae-124061	Triticum aestivum	81.62	0.00e+00	917.00
IUUC-Tur-126276	Triticum urartu	79.89	0.00e+00	833.00
IUUC-Tbe-127613	Tupaia belangeri	32.17	5.00e-08	53.10
IUUC-Ttr-128612	Tursiops truncatus	27.91	2.00e-12	67.40
IUUC-Vvi-131729	Vitis vinifera	61.98	0.00e+00	697.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence