iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Cin-025560

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

EAAA01001687

Gene Name

LOC100178525

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSCING00000009521.3	ENSCINT00000019387.3	ENSCINP00000019387.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.10e-59	193.1	513	552
UBD/Beta-Prp	4.80e-96	321.3	426	641

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH+ +++c++f +    l+++s Dg+ik+W+l+++++lk+
   Q: 513  GHKRGIWCVQFsPMdQVLATSSADGSIKLWSLSDFTCLKT 552
           8**********977789********************986 PP

UBD/Beta-Prp

   S: 51   heaevtavk.fspdgkilvtgseDrtikvwdls...tgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsg 135
           h+  v av+ ++++ ++lv+gs+D+t+k+w ++   +    ht+ +h++++ s+ +sp+++ ++sGs+d+ +++w+++ g+++  t++g
   Q: 426  HTHDVGAVTcCNNKMEFLVSGSQDQTLKIWTINetfQLRVKHTVMAHSKNINSIVVSPNDKLIASGSQDKLAKLWKVSDGSVVG-TFKG 513
           5556655540444555**************998766778889999**************************************9.**** PP
   S: 136  hdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdn 224
           h++ ++cv+++p +++l+++s+D+ ++lW+l+  ++l+tl+g h+ sv +++f  +g+++vs++ dg +klw ++ +ec++t+++h++ 
   Q: 514  HKRGIWCVQFSPMDQVLATSSADGSIKLWSLSDFTCLKTLEG-HDCSVLKVIFIAKGTQMVSCGSDGLLKLWTIKLSECIQTVEAHDEK 601
           *****************************************9.********************************************88 PP
   S: 225  vksvrfspnderlvsgssDgsiriW.dlrsgdllktlqlh 263
            + +  + +d+ ++sg++D  i++W d++  +    ++ +
   Q: 602  AWALCSDVEDTMIISGGADSIISFWkDVTDEQRREDIEAK 641
           888888888****************977766665555544 PP

Organism

Ciona intestinalis

Protein Sequence
(Fasta)

KPKAKPQAKL QLRTKYDLIK KWEPFFTGGR VEVSNSENYL LCVCGDKIKI VNVDSGLVEK 60
ELSHDGDDVT CLAVSPDDSM IVTSTKSLLL KQWEWKMEVK CVRTWRAIHM FPVVSMDFDP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAACCTAAAG CAAAACCACA AGCAAAACTA CAACTTCGTA CAAAATATGA TTTAATAAAG 60
AAATGGGAGC CATTTTTTAC AGGAGGTCGT GTTGAAGTTT CCAACAGTGA AAACTATTTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR013934--SSU_processome_Utp13
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08625--Utp13
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000765	Aegilops tauschii	33.42	1.00e-130	459.00
IUUC-Aml-002376	Ailuropoda melanoleuca	44.98	0.00e+00	732.00
IUUC-Atr-002486	Amborella trichopoda	36.46	2.00e-152	531.00
IUUC-Apl-003519	Anas platyrhynchos	46.41	0.00e+00	671.00
IUUC-Aca-004363	Anolis carolinensis	45.61	3.00e-106	377.00
IUUC-Aly-006152	Arabidopsis lyrata	34.07	4.00e-136	477.00
IUUC-Ath-006966	Arabidopsis thaliana	34.53	2.00e-138	484.00
IUUC-Ago-007746	Ashbya gossypii	28.42	3.00e-96	344.00
IUUC-Acl-008009	Aspergillus clavatus	27.44	4.00e-104	371.00
IUUC-Afl-008681	Aspergillus flavus	27.27	2.00e-93	335.00
IUUC-Afu-008798	Aspergillus fumigatus	27.23	3.00e-92	332.00
IUUC-Ani-009278	Aspergillus nidulans	27.10	1.00e-101	363.00
IUUC-Ang-009640	Aspergillus niger	28.42	2.00e-103	368.00
IUUC-Aor-010160	Aspergillus oryzae	27.06	4.00e-93	334.00
IUUC-Ate-010320	Aspergillus terreus	26.74	4.00e-100	358.00
IUUC-Ame-010930	Astyanax mexicanus	51.83	5.00e-57	212.00
IUUC-Bgr-012054	Blumeria graminis	27.41	7.00e-90	323.00
IUUC-Bta-012611	Bos taurus	45.70	0.00e+00	702.00
IUUC-Bci-013797	Botrytis cinerea	28.05	4.00e-103	368.00
IUUC-Bdi-014384	Brachypodium distachyon	36.71	1.00e-152	532.00
IUUC-Bol-015097	Brassica oleracea	34.77	7.00e-139	486.00
IUUC-Bra-017328	Brassica rapa	34.40	9.00e-136	476.00
IUUC-Cel-018664	Caenorhabditis elegans	30.55	2.00e-112	398.00
IUUC-Cja-019092	Callithrix jacchus	45.39	0.00e+00	726.00
IUUC-Cfa-021040	Canis familiaris	45.65	0.00e+00	724.00
IUUC-Cpo-022529	Cavia porcellus	45.06	0.00e+00	700.00
IUUC-Cre-022986	Chlamydomonas reinhardtii	50.36	2.00e-41	159.00
IUUC-Csa-024205	Chlorocebus sabaeus	45.01	0.00e+00	727.00
IUUC-Cgl-026481	Colletotrichum gloeosporioides	30.90	4.00e-115	407.00
IUUC-Cne-027082	Cryptococcus neoformans	29.07	1.00e-108	386.00
IUUC-Cme-027159	Cyanidioschyzon merolae	24.29	1.00e-33	137.00
IUUC-Dre-028138	Danio rerio	42.68	0.00e+00	672.00
IUUC-Dno-029914	Dasypus novemcinctus	39.60	3.00e-132	464.00
IUUC-Dor-030685	Dipodomys ordii	43.57	4.00e-114	404.00
IUUC-Dse-031429	Dothistroma septosporum	27.52	4.00e-97	348.00
IUUC-Dme-031995	Drosophila melanogaster	29.79	1.00e-108	385.00
IUUC-Ete-033086	Echinops telfairi	48.55	2.00e-118	418.00
IUUC-Eca-034354	Equus caballus	45.82	0.00e+00	706.00
IUUC-Eeu-034832	Erinaceus europaeus	47.37	1.00e-123	436.00
IUUC-Fca-036136	Felis catus	43.30	0.00e+00	681.00
IUUC-Fal-036859	Ficedula albicollis	46.24	0.00e+00	753.00
IUUC-Fox-037863	Fusarium oxysporum	30.00	2.00e-97	349.00
IUUC-Fso-038389	Fusarium solani	29.19	1.00e-106	379.00
IUUC-Gmo-038711	Gadus morhua	42.66	0.00e+00	648.00
IUUC-Ggr-039820	Gaeumannomyces graminis	28.04	1.00e-102	366.00
IUUC-Gga-040263	Gallus gallus	47.94	0.00e+00	773.00
IUUC-Gac-041291	Gasterosteus aculeatus	46.14	0.00e+00	752.00
IUUC-Gma-044026	Glycine max	35.80	9.00e-155	539.00
IUUC-Ggo-044693	Gorilla gorilla	45.26	0.00e+00	712.00
IUUC-Hsa-046048	Homo sapiens	45.26	0.00e+00	713.00
IUUC-Hvu-047608	Hordeum vulgare	35.97	4.00e-150	524.00
IUUC-Itr-048391	Ictidomys tridecemlineatus	45.57	0.00e+00	744.00
IUUC-Kpa-049209	Komagataella pastoris	30.57	4.00e-101	361.00
IUUC-Lch-050085	Latimeria chalumnae	46.32	0.00e+00	714.00
IUUC-Lpe-050945	Leersia perrieri	35.64	2.00e-146	511.00
IUUC-Loc-052679	Lepisosteus oculatus	49.00	0.00e+00	824.00
IUUC-Laf-053685	Loxodonta africana	44.75	0.00e+00	662.00
IUUC-Mcc-055861	Macaca mulatta	45.13	0.00e+00	711.00
IUUC-Meu-056820	Macropus eugenii	41.95	4.00e-155	540.00
IUUC-Mor-057234	Magnaporthe oryzae	27.46	3.00e-97	348.00
IUUC-Mpo-057456	Magnaporthe poae	30.46	1.00e-86	312.00
IUUC-Mtr-058122	Medicago truncatula	34.98	9.00e-153	533.00
IUUC-Mla-058980	Melampsora laricipopulina	29.05	3.00e-89	321.00
IUUC-Mga-060080	Meleagris gallopavo	47.39	0.00e+00	772.00
IUUC-Mvi-060338	Microbotryum violaceum	32.73	1.00e-131	462.00
IUUC-Mmr-060762	Microcebus murinus	44.70	0.00e+00	700.00
IUUC-Mdo-061975	Monodelphis domestica	47.16	0.00e+00	714.00
IUUC-Mmu-064038	Mus musculus	45.39	0.00e+00	701.00
IUUC-Mac-065189	Musa acuminata	35.14	8.00e-149	519.00
IUUC-Mpu-066526	Mustela putorius furo	45.11	0.00e+00	702.00
IUUC-Mlu-067716	Myotis lucifugus	46.12	0.00e+00	766.00
IUUC-Nfi-068474	Neosartorya fischeri	27.63	4.00e-97	348.00
IUUC-Ncr-068826	Neurospora crassa	27.96	4.00e-97	348.00
IUUC-Nle-069832	Nomascus leucogenys	45.19	0.00e+00	732.00
IUUC-Opr-071183	Ochotona princeps	44.34	0.00e+00	673.00
IUUC-Ont-072371	Oreochromis niloticus	46.19	0.00e+00	737.00
IUUC-Oan-073491	Ornithorhynchus anatinus	43.30	6.00e-174	602.00
IUUC-Oba-075963	Oryza barthii	36.95	5.00e-147	513.00
IUUC-Obr-076173	Oryza brachyantha	36.23	2.00e-149	521.00
IUUC-Ogl-077692	Oryza glaberrima	37.08	3.00e-147	514.00
IUUC-Ogu-078965	Oryza glumaepatula	36.95	5.00e-147	513.00
IUUC-Oin-079708	Oryza indica	36.68	2.00e-146	511.00
IUUC-Olo-080679	Oryza longistaminata	36.70	2.00e-146	511.00
IUUC-Oni-082960	Oryza nivara	36.68	2.00e-146	511.00
IUUC-Opu-083282	Oryza punctata	36.55	4.00e-141	494.00
IUUC-Oru-085224	Oryza rufipogon	36.95	6.00e-147	513.00
IUUC-Osa-085320	Oryza sativa	36.95	6.00e-147	513.00
IUUC-Ola-086370	Oryzias latipes	36.23	1.00e-100	359.00
IUUC-Olu-087814	Ostreococcus lucimarinus	29.74	9.00e-95	340.00
IUUC-Oga-088458	Otolemur garnettii	45.13	0.00e+00	746.00
IUUC-Oar-090032	Ovis aries	41.06	1.00e-139	489.00
IUUC-Ptr-090749	Pan troglodytes	45.39	0.00e+00	711.00
IUUC-Pan-091691	Papio anubis	43.80	0.00e+00	684.00
IUUC-Psi-093200	Pelodiscus sinensis	46.55	0.00e+00	752.00
IUUC-Pma-094165	Petromyzon marinus	44.82	2.00e-157	547.00
IUUC-Pno-095048	Phaeosphaeria nodorum	29.36	3.00e-86	311.00
IUUC-Ppa-095336	Physcomitrella patens	37.10	3.00e-151	528.00
IUUC-Pfo-096132	Poecilia formosa	45.81	0.00e+00	724.00
IUUC-Pab-097855	Pongo abelii	45.13	0.00e+00	726.00
IUUC-Pop-099434	Populus trichocarpa	32.31	3.00e-134	471.00
IUUC-Pca-100232	Procavia capensis	40.55	1.00e-73	270.00
IUUC-Ppe-101665	Prunus persica	36.23	1.00e-151	529.00
IUUC-Pva-102178	Pteropus vampyrus	45.12	0.00e+00	715.00
IUUC-Pgr-103288	Puccinia graminis	29.31	2.00e-83	302.00
IUUC-Ptt-103808	Puccinia triticina	31.20	4.00e-80	291.00
IUUC-Pte-104205	Pyrenophora teres	27.05	3.00e-100	358.00
IUUC-Pyt-104658	Pyrenophora triticirepentis	27.21	2.00e-92	332.00
IUUC-Rno-105617	Rattus norvegicus	45.95	0.00e+00	706.00
IUUC-Sce-106281	Saccharomyces cerevisiae	29.26	2.00e-96	345.00
IUUC-Sha-107378	Sarcophilus harrisii	45.86	0.00e+00	703.00
IUUC-Sja-107718	Schizosaccharomyces japonicus	31.47	1.00e-115	409.00
IUUC-Spo-108361	Schizosaccharomyces pombe	33.04	5.00e-118	417.00
IUUC-Ssl-108592	Sclerotinia sclerotiorum	27.42	8.00e-107	380.00
IUUC-Smo-109257	Selaginella moellendorffii	34.83	3.00e-149	521.00
IUUC-Sit-110258	Setaria italica	36.71	1.00e-154	538.00
IUUC-Sly-111521	Solanum lycopersicum	35.98	1.00e-152	532.00
IUUC-Stu-112718	Solanum tuberosum	47.76	5.00e-32	128.00
IUUC-Sbi-114768	Sorghum bicolor	36.22	1.00e-154	539.00
IUUC-Sre-115159	Sporisorium reilianum	29.47	5.00e-79	288.00
IUUC-Ssc-116342	Sus scrofa	34.21	8.00e-117	413.00
IUUC-Tgu-117320	Taeniopygia guttata	45.74	0.00e+00	708.00
IUUC-Tru-118024	Takifugu rubripes	45.41	0.00e+00	731.00
IUUC-Tni-119971	Tetraodon nigroviridis	45.90	0.00e+00	729.00
IUUC-Tca-121248	Theobroma cacao	35.43	3.00e-145	508.00
IUUC-Tre-122079	Trichoderma reesei	29.93	1.00e-101	363.00
IUUC-Tvi-122554	Trichoderma virens	29.82	4.00e-103	367.00
IUUC-Tae-124473	Triticum aestivum	36.17	3.00e-152	531.00
IUUC-Tur-126436	Triticum urartu	34.79	7.00e-118	416.00
IUUC-Tme-126942	Tuber melanosporum	29.80	4.00e-100	358.00
IUUC-Tbe-128000	Tupaia belangeri	48.37	8.00e-45	174.00
IUUC-Ttr-128964	Tursiops truncatus	44.18	0.00e+00	706.00
IUUC-Uma-129473	Ustilago maydis	28.40	2.00e-89	322.00
IUUC-Vda-129749	Verticillium dahliae	29.87	8.00e-93	333.00
IUUC-Vvi-131511	Vitis vinifera	35.04	1.00e-146	512.00
IUUC-Xtr-132816	Xenopus tropicalis	40.89	3.00e-176	610.00
IUUC-Xma-133672	Xiphophorus maculatus	45.81	0.00e+00	737.00
IUUC-Yli-134602	Yarrowia lipolytica	33.33	5.00e-129	453.00
IUUC-Zma-135559	Zea mays	35.80	4.00e-146	510.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence