iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099292

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000342

Gene Name

POPTRDRAFT_867268; POPTR_0006s10810g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0006s10810	POPTR_0006s10810.1	POPTR_0006s10810.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	2.30e-31	108.8	268	340

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           vp +f+CpIsl+lMrdPvv+++G+tydr+sI  w++sg++tcP+t+q l +++l+Pn +l++li  wc e+++
   Q: 268  VPVDFRCPISLDLMRDPVVVATGQTYDRESINLWIESGHSTCPKTGQALVNTNLIPNRALKNLIAMWCREQKI 340
           899******************************************************************9876 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MAVSPQVFPP RKRRPSAGAF IPPKFSDQRL LQTLLELSQE ISSLKPLQFL LKRTSSSILR 60
KTKILSILFE ELLKNPILFL YPTLLCFEEM YLVLQRFKTL LEDCVNGSRM WLLMQSDSVA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAAGAACCCA ACATTGTAAG AAACAGCTTG TTTCAACTAA CGAAACCAAA CCAATAATCT 60
CTTACAAATC TTCACCTTCA ATCAAAAGCC AACAAAACTC TTATCATCAT CTCTTACAAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

pop:POPTR_0006s10810g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000493	Aegilops tauschii	50.00	8.00e-76	276.00
IUUC-Atr-002566	Amborella trichopoda	46.96	1.00e-132	466.00
IUUC-Aly-005828	Arabidopsis lyrata	58.75	0.00e+00	695.00
IUUC-Ath-007101	Arabidopsis thaliana	58.37	0.00e+00	689.00
IUUC-Bdi-014833	Brachypodium distachyon	47.99	1.00e-111	396.00
IUUC-Bol-015511	Brassica oleracea	55.95	0.00e+00	710.00
IUUC-Bra-017197	Brassica rapa	55.95	0.00e+00	706.00
IUUC-Gma-043531	Glycine max	57.93	0.00e+00	631.00
IUUC-Hvu-047557	Hordeum vulgare	47.83	3.00e-120	425.00
IUUC-Lpe-051445	Leersia perrieri	45.53	3.00e-120	425.00
IUUC-Mtr-058241	Medicago truncatula	58.12	0.00e+00	653.00
IUUC-Mac-065033	Musa acuminata	47.70	9.00e-114	404.00
IUUC-Oba-075591	Oryza barthii	45.27	1.00e-120	426.00
IUUC-Obr-076550	Oryza brachyantha	45.72	1.00e-103	370.00
IUUC-Ogl-076947	Oryza glaberrima	46.09	2.00e-119	422.00
IUUC-Ogu-078626	Oryza glumaepatula	45.27	9.00e-121	427.00
IUUC-Oin-080113	Oryza indica	45.11	3.00e-120	425.00
IUUC-Ome-081924	Oryza meridionalis	46.20	2.00e-121	429.00
IUUC-Oni-082284	Oryza nivara	45.27	7.00e-121	427.00
IUUC-Opu-083971	Oryza punctata	46.14	6.00e-120	424.00
IUUC-Oru-084898	Oryza rufipogon	45.58	6.00e-127	447.00
IUUC-Osa-085986	Oryza sativa	46.78	5.00e-121	427.00
IUUC-Ppe-101643	Prunus persica	66.62	0.00e+00	897.00
IUUC-Sit-110652	Setaria italica	46.15	5.00e-130	457.00
IUUC-Sly-111346	Solanum lycopersicum	62.63	0.00e+00	812.00
IUUC-Stu-112435	Solanum tuberosum	62.27	0.00e+00	774.00
IUUC-Sbi-114567	Sorghum bicolor	45.19	2.00e-116	412.00
IUUC-Tca-121203	Theobroma cacao	71.62	0.00e+00	910.00
IUUC-Tae-124205	Triticum aestivum	47.71	1.00e-112	399.00
IUUC-Vvi-131545	Vitis vinifera	67.22	0.00e+00	808.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence