iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007119

UUCD1 version

UUC-ArT-00462

Ensembl Protein ID

AT4G21130.1

UniProt Accession

Q3MKM6; O49554; YAOL_ARATH

Genbank Protein ID

AAY21208.1; CAA17532.1; CAB79113.1; AEE84406.1

Protein Name

U3 snoRNP-associated protein-like EMB2271; Protein EMBRYO DEFECTIVE 2271; Protein YAO-like

Genbank Nucleotide ID

AY874865; AL021960; AL161554; CP002687

Gene Name

EMB2271; At4g21130; F7J7.70

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G21130	AT4G21130.1	AT4G21130.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.30e-26	91.1	246	276

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWD 29
           gH + v++l+f   +  l sGs+Dgt+ +W+
   Q: 246  GHCGIVSSLCFreGTAELFSGSYDGTLSIWN 276
           899********7533569************9 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Component of a nucleolar small nuclear ribonucleoprotein particle (snoRNP) thought to participate in the processing and modification of pre-ribosomal RNA (By similarity). Essential for embryogenesis (By similarity). May function during late embryogenesis (PubMed:20699009).

Protein Sequence
(Fasta)

MKLEKKKGIG AKRRGKKSSI DHDPFLEEET EKRRKFNYDD DDDIESVESE EEGKVGEEVE 60
DEFAHETVGE KRKRLAEDTL NRIEEAKQRE HEEDNEEDDD FRDSLVAKTL MQEQLEKSGR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGGGAGAGAA GAATGAAACT CGAGAAGAAG AAAGGTATTG GGGCGAAGAG AAGAGGGAAA 60
AAGAGTTCCA TCGATCATGA TCCTTTCTTA GAGGAAGAGA CAGAGAAGCG GAGAAAATTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0687--Ribonucleoprotein
KW-0694--RNA-binding
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005730--C:nucleolus
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0006364--P:rRNA processing

KEGG

ath:AT4G21130

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002072	Ailuropoda melanoleuca	37.60	7.00e-71	260.00
IUUC-Apl-003264	Anas platyrhynchos	39.32	6.00e-71	260.00
IUUC-Aca-004898	Anolis carolinensis	40.00	9.00e-78	283.00
IUUC-Aly-006383	Arabidopsis lyrata	85.18	0.00e+00	682.00
IUUC-Acl-008345	Aspergillus clavatus	28.12	6.00e-34	138.00
IUUC-Afl-008718	Aspergillus flavus	33.07	2.00e-35	142.00
IUUC-Afu-008966	Aspergillus fumigatus	34.51	3.00e-36	145.00
IUUC-Ani-009214	Aspergillus nidulans	30.41	8.00e-40	157.00
IUUC-Ang-009774	Aspergillus niger	30.00	2.00e-38	153.00
IUUC-Aor-009956	Aspergillus oryzae	33.07	2.00e-35	142.00
IUUC-Ate-010449	Aspergillus terreus	33.99	4.00e-37	148.00
IUUC-Ame-011860	Astyanax mexicanus	39.52	8.00e-78	283.00
IUUC-Bgr-012213	Blumeria graminis	28.23	5.00e-45	175.00
IUUC-Bci-013973	Botrytis cinerea	29.57	5.00e-43	168.00
IUUC-Cja-019532	Callithrix jacchus	37.23	2.00e-70	259.00
IUUC-Cpo-021527	Cavia porcellus	37.63	4.00e-69	254.00
IUUC-Csa-023106	Chlorocebus sabaeus	38.03	2.00e-71	262.00
IUUC-Cgl-026619	Colletotrichum gloeosporioides	27.99	4.00e-43	168.00
IUUC-Cne-027070	Cryptococcus neoformans	27.29	2.00e-35	142.00
IUUC-Cme-027125	Cyanidioschyzon merolae	28.61	2.00e-35	142.00
IUUC-Dre-027919	Danio rerio	38.03	7.00e-74	270.00
IUUC-Dor-030363	Dipodomys ordii	39.90	9.00e-38	150.00
IUUC-Dse-031503	Dothistroma septosporum	27.77	5.00e-38	152.00
IUUC-Dme-031979	Drosophila melanogaster	32.78	2.00e-60	226.00
IUUC-Fal-037058	Ficedula albicollis	38.30	2.00e-72	265.00
IUUC-Fox-038036	Fusarium oxysporum	29.75	5.00e-48	184.00
IUUC-Fso-038298	Fusarium solani	29.79	5.00e-48	185.00
IUUC-Gmo-038796	Gadus morhua	37.99	9.00e-61	226.00
IUUC-Ggr-040074	Gaeumannomyces graminis	28.80	1.00e-41	164.00
IUUC-Gga-040743	Gallus gallus	41.24	1.00e-62	232.00
IUUC-Gac-042583	Gasterosteus aculeatus	34.68	3.00e-68	251.00
IUUC-Gma-042659	Glycine max	58.10	2.00e-141	495.00
IUUC-Ggo-045543	Gorilla gorilla	38.03	2.00e-71	262.00
IUUC-Hsa-047017	Homo sapiens	37.77	8.00e-71	260.00
IUUC-Itr-048062	Ictidomys tridecemlineatus	38.42	3.00e-73	268.00
IUUC-Kpa-049262	Komagataella pastoris	27.67	5.00e-32	131.00
IUUC-Lch-050566	Latimeria chalumnae	39.04	8.00e-70	257.00
IUUC-Loc-051997	Lepisosteus oculatus	40.16	3.00e-77	281.00
IUUC-Lma-053182	Leptosphaeria maculans	25.79	2.00e-36	146.00
IUUC-Laf-054105	Loxodonta africana	36.70	1.00e-68	253.00
IUUC-Mcc-055215	Macaca mulatta	37.77	2.00e-71	262.00
IUUC-Mor-057069	Magnaporthe oryzae	28.91	6.00e-47	181.00
IUUC-Mpo-057358	Magnaporthe poae	33.59	8.00e-38	151.00
IUUC-Mga-060024	Meleagris gallopavo	39.63	3.00e-68	251.00
IUUC-Mvi-060371	Microbotryum violaceum	31.33	1.00e-41	164.00
IUUC-Mmr-061403	Microcebus murinus	36.87	1.00e-70	259.00
IUUC-Mmu-063646	Mus musculus	37.50	3.00e-71	261.00
IUUC-Mac-065149	Musa acuminata	60.26	1.00e-140	492.00
IUUC-Mpu-065760	Mustela putorius furo	37.63	9.00e-71	260.00
IUUC-Mlu-067963	Myotis lucifugus	37.77	2.00e-70	258.00
IUUC-Nfi-068288	Neosartorya fischeri	34.90	2.00e-36	146.00
IUUC-Nle-069766	Nomascus leucogenys	39.49	3.00e-59	222.00
IUUC-Opr-070906	Ochotona princeps	36.97	1.00e-69	256.00
IUUC-Ont-071661	Oreochromis niloticus	38.56	2.00e-75	275.00
IUUC-Ocu-074263	Oryctolagus cuniculus	37.77	7.00e-71	260.00
IUUC-Ola-086991	Oryzias latipes	38.03	5.00e-72	264.00
IUUC-Olu-087891	Ostreococcus lucimarinus	36.30	7.00e-70	256.00
IUUC-Oga-088991	Otolemur garnettii	36.44	4.00e-68	251.00
IUUC-Ptr-091359	Pan troglodytes	37.77	3.00e-71	261.00
IUUC-Pan-092499	Papio anubis	37.77	3.00e-71	261.00
IUUC-Pma-094447	Petromyzon marinus	33.64	2.00e-51	195.00
IUUC-Pno-095008	Phaeosphaeria nodorum	25.05	3.00e-35	142.00
IUUC-Ppa-095680	Physcomitrella patens	48.43	6.00e-106	377.00
IUUC-Pfo-096430	Poecilia formosa	38.16	3.00e-73	268.00
IUUC-Pab-097649	Pongo abelii	38.03	7.00e-71	260.00
IUUC-Pop-100037	Populus trichocarpa	64.66	2.00e-146	511.00
IUUC-Pca-100317	Procavia capensis	36.62	1.00e-27	117.00
IUUC-Pgr-103655	Puccinia graminis	32.59	4.00e-34	139.00
IUUC-Ptt-103812	Puccinia triticina	27.59	2.00e-28	119.00
IUUC-Pte-104243	Pyrenophora teres	25.56	7.00e-37	148.00
IUUC-Pyt-104512	Pyrenophora triticirepentis	25.56	5.00e-37	148.00
IUUC-Rno-104973	Rattus norvegicus	37.50	4.00e-72	265.00
IUUC-Sja-107821	Schizosaccharomyces japonicus	27.73	1.00e-47	183.00
IUUC-Spo-108329	Schizosaccharomyces pombe	30.85	1.00e-54	206.00
IUUC-Ssl-108552	Sclerotinia sclerotiorum	27.31	2.00e-46	179.00
IUUC-Smo-109659	Selaginella moellendorffii	49.27	2.00e-89	322.00
IUUC-Sar-113315	Sorex araneus	44.44	3.00e-24	105.00
IUUC-Tgu-117242	Taeniopygia guttata	38.49	1.00e-45	175.00
IUUC-Tru-118285	Takifugu rubripes	37.50	2.00e-78	285.00
IUUC-Tni-120368	Tetraodon nigroviridis	39.30	4.00e-77	281.00
IUUC-Tre-122106	Trichoderma reesei	29.47	3.00e-47	182.00
IUUC-Tvi-122526	Trichoderma virens	29.01	9.00e-46	177.00
IUUC-Tme-126985	Tuber melanosporum	28.09	8.00e-45	174.00
IUUC-Tbe-127923	Tupaia belangeri	37.60	3.00e-70	258.00
IUUC-Ttr-129308	Tursiops truncatus	34.14	2.00e-60	226.00
IUUC-Vda-129910	Verticillium dahliae	30.82	1.00e-43	170.00
IUUC-Xtr-132118	Xenopus tropicalis	35.70	5.00e-72	264.00
IUUC-Xma-133804	Xiphophorus maculatus	38.38	3.00e-74	271.00
IUUC-Yli-134639	Yarrowia lipolytica	27.13	5.00e-35	141.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence