iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-016802

Ensembl Protein ID

Bra027382.1-P

UniProt Accession

M4EF20; M4EF20_BRARP

Protein Name

Ubiquitin-like protein ATG12

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra027382	Bra027382.1	Bra027382.1-P

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
ULD/UBL/ATG12	44.32	3.00e-16	81.30	IUUC-Hsa-046903

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Brassica rapa

Functional Description
(View)

Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.

Protein Sequence
(Fasta)

MSSVRKIVVH LRATGGAPIL KQNKFKISGT DKFAKVIDFL GRQLHSDSLF VYVNSAFSPN 60
PDESVIDLYN NFGIDGKLVV NYACSMAWG 89

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Nucleotide Sequence
(Fasta)

ATGAGCTCCG TTCGGAAAAG TGAGTAATTG ATTCGTCGTA TACGAAGATG TTGAATCTAT 60
TGTTATTTGA TTAGTAGCTT TGTATACTCT TTCACCGCGC CGATTTGACC ATATCTGTTT 120

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Sequence Source

Ensembl

Keyword

KW-0072--Autophagy
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-1017--Isopeptide bond
KW-1185--Reference proteome
KW-0833--Ubl conjugation pathway

Interpro

IPR007242--Atg12
IPR029071--Ubiquitin-rel_dom

Pfam

PF04110--APG12

Gene Ontology

GO:0005737--C:cytoplasm
GO:0000045--P:autophagosome assembly

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001177	Aegilops tauschii	75.29	3.00e-36	142.00
IUUC-Aml-002116	Ailuropoda melanoleuca	45.45	3.00e-17	80.90
IUUC-Atr-002615	Amborella trichopoda	82.95	1.00e-40	157.00
IUUC-Apl-003753	Anas platyrhynchos	55.00	1.00e-09	53.90
IUUC-Aca-005231	Anolis carolinensis	43.18	5.00e-14	69.70
IUUC-Aly-006172	Arabidopsis lyrata	93.10	2.00e-44	169.00
IUUC-Ath-006953	Arabidopsis thaliana	90.91	3.00e-44	169.00
IUUC-Ago-007970	Ashbya gossypii	29.76	5.00e-06	43.90
IUUC-Acl-008072	Aspergillus clavatus	42.53	5.00e-15	72.40
IUUC-Afl-008725	Aspergillus flavus	42.53	6.00e-15	73.20
IUUC-Afu-008967	Aspergillus fumigatus	42.53	4.00e-14	70.50
IUUC-Ani-009248	Aspergillus nidulans	41.38	5.00e-14	70.10
IUUC-Ang-009684	Aspergillus niger	43.02	1.00e-13	69.30
IUUC-Aor-009947	Aspergillus oryzae	42.53	6.00e-15	73.20
IUUC-Ame-011656	Astyanax mexicanus	40.91	7.00e-15	72.00
IUUC-Bgr-012174	Blumeria graminis	44.94	6.00e-14	69.30
IUUC-Bta-012483	Bos taurus	44.32	2.00e-17	80.90
IUUC-Bci-013755	Botrytis cinerea	38.54	5.00e-10	56.20
IUUC-Bdi-014156	Brachypodium distachyon	77.65	6.00e-37	144.00
IUUC-Bol-015683	Brassica oleracea	90.91	5.00e-43	164.00
IUUC-Cel-018242	Caenorhabditis elegans	30.77	1.00e-07	48.10
IUUC-Cja-019514	Callithrix jacchus	44.32	3.00e-17	81.30
IUUC-Cfa-020748	Canis familiaris	45.45	2.00e-17	81.30
IUUC-Cpo-021965	Cavia porcellus	45.45	2.00e-17	81.30
IUUC-Cre-023009	Chlamydomonas reinhardtii	49.41	2.00e-20	89.70
IUUC-Csa-023494	Chlorocebus sabaeus	44.32	2.00e-17	80.90
IUUC-Cho-024631	Choloepus hoffmanni	44.32	4.00e-17	80.90
IUUC-Cin-025609	Ciona intestinalis	47.13	1.00e-17	80.50
IUUC-Cgl-026722	Colletotrichum gloeosporioides	39.33	5.00e-11	59.70
IUUC-Dre-027479	Danio rerio	42.05	1.00e-15	74.30
IUUC-Dno-029693	Dasypus novemcinctus	38.64	2.00e-12	64.30
IUUC-Dse-031440	Dothistroma septosporum	39.08	9.00e-14	68.90
IUUC-Dme-031892	Drosophila melanogaster	35.63	2.00e-12	63.50
IUUC-Ete-032550	Echinops telfairi	45.12	1.00e-16	77.80
IUUC-Eca-033553	Equus caballus	44.32	2.00e-17	81.30
IUUC-Fca-036524	Felis catus	44.83	4.00e-17	80.50
IUUC-Fal-036942	Ficedula albicollis	41.67	2.00e-16	76.30
IUUC-Fox-037753	Fusarium oxysporum	43.18	5.00e-14	69.70
IUUC-Gmo-039498	Gadus morhua	42.05	1.00e-14	70.90
IUUC-Ggr-039852	Gaeumannomyces graminis	39.33	6.00e-11	60.10
IUUC-Gga-041263	Gallus gallus	44.32	7.00e-17	79.30
IUUC-Gac-042346	Gasterosteus aculeatus	41.67	1.00e-14	70.90
IUUC-Gma-042896	Glycine max	87.50	7.00e-43	164.00
IUUC-Ggo-045601	Gorilla gorilla	44.32	3.00e-17	80.90
IUUC-Hsa-046903	Homo sapiens	44.32	2.00e-17	80.90
IUUC-Hvu-047239	Hordeum vulgare	77.65	7.00e-37	144.00
IUUC-Itr-048445	Ictidomys tridecemlineatus	44.32	3.00e-17	80.90
IUUC-Kpa-049355	Komagataella pastoris	33.33	8.00e-12	62.40
IUUC-Lch-050619	Latimeria chalumnae	43.18	2.00e-16	78.20
IUUC-Loc-052102	Lepisosteus oculatus	45.83	5.00e-03	32.00
IUUC-Lma-053299	Leptosphaeria maculans	35.14	2.00e-08	50.40
IUUC-Laf-054205	Loxodonta africana	44.32	2.00e-17	81.30
IUUC-Meu-056804	Macropus eugenii	45.45	1.00e-17	81.30
IUUC-Mor-057052	Magnaporthe oryzae	37.78	1.00e-10	58.90
IUUC-Mtr-057961	Medicago truncatula	88.64	2.00e-43	166.00
IUUC-Mla-059045	Melampsora laricipopulina	49.44	2.00e-23	100.00
IUUC-Mvi-060360	Microbotryum violaceum	52.87	2.00e-23	100.00
IUUC-Mmr-061654	Microcebus murinus	44.32	1.00e-17	80.90
IUUC-Mdo-062649	Monodelphis domestica	44.32	3.00e-17	80.50
IUUC-Mmu-064105	Mus musculus	44.32	2.00e-17	80.90
IUUC-Mac-065532	Musa acuminata	81.82	3.00e-40	155.00
IUUC-Mpu-066269	Mustela putorius furo	45.45	1.00e-17	81.60
IUUC-Mlu-067631	Myotis lucifugus	44.32	5.00e-17	80.10
IUUC-Nfi-068468	Neosartorya fischeri	42.53	1.00e-14	70.90
IUUC-Ncr-068750	Neurospora crassa	33.71	8.00e-10	55.80
IUUC-Nle-069483	Nomascus leucogenys	44.32	3.00e-17	80.90
IUUC-Opr-070936	Ochotona princeps	44.32	5.00e-17	80.10
IUUC-Obr-076322	Oryza brachyantha	74.12	2.00e-36	142.00
IUUC-Ogl-077226	Oryza glaberrima	75.00	5.00e-34	134.00
IUUC-Oin-079220	Oryza indica	75.00	5.00e-26	108.00
IUUC-Olo-080688	Oryza longistaminata	75.00	5.00e-34	134.00
IUUC-Ome-081265	Oryza meridionalis	75.00	5.00e-34	134.00
IUUC-Oru-084342	Oryza rufipogon	74.12	9.00e-36	142.00
IUUC-Osa-086212	Oryza sativa	75.00	5.00e-34	134.00
IUUC-Ola-087277	Oryzias latipes	42.05	2.00e-15	73.20
IUUC-Olu-087780	Ostreococcus lucimarinus	35.48	2.00e-13	66.60
IUUC-Oga-088175	Otolemur garnettii	44.32	2.00e-17	81.30
IUUC-Oar-089477	Ovis aries	44.32	3.00e-17	80.90
IUUC-Ptr-091129	Pan troglodytes	44.32	3.00e-17	80.90
IUUC-Psi-093351	Pelodiscus sinensis	44.32	2.00e-17	80.90
IUUC-Pno-094948	Phaeosphaeria nodorum	38.57	2.00e-07	47.80
IUUC-Ppa-095788	Physcomitrella patens	75.29	5.00e-37	144.00
IUUC-Pfo-096993	Poecilia formosa	39.77	7.00e-14	68.60
IUUC-Pab-098502	Pongo abelii	44.32	3.00e-17	81.30
IUUC-Pop-098819	Populus trichocarpa	73.56	7.00e-38	147.00
IUUC-Pca-100144	Procavia capensis	31.82	2.00e-06	45.10
IUUC-Ppe-101560	Prunus persica	89.02	2.00e-39	153.00
IUUC-Pva-102810	Pteropus vampyrus	39.13	2.00e-09	54.30
IUUC-Pgr-103531	Puccinia graminis	50.57	3.00e-23	99.40
IUUC-Ptt-103753	Puccinia triticina	50.57	6.00e-23	98.60
IUUC-Pyt-104733	Pyrenophora triticirepentis	41.86	5.00e-13	66.60
IUUC-Rno-106072	Rattus norvegicus	45.45	6.00e-18	82.80
IUUC-Sce-106275	Saccharomyces cerevisiae	34.88	3.00e-12	64.70
IUUC-Sha-107554	Sarcophilus harrisii	45.45	1.00e-17	81.60
IUUC-Sja-107682	Schizosaccharomyces japonicus	35.23	6.00e-13	65.90
IUUC-Spo-108275	Schizosaccharomyces pombe	40.91	3.00e-17	80.10
IUUC-Smo-109151	Selaginella moellendorffii	56.79	6.00e-25	104.00
IUUC-Sit-110270	Setaria italica	81.18	3.00e-38	148.00
IUUC-Sly-111862	Solanum lycopersicum	85.88	6.00e-41	157.00
IUUC-Stu-112663	Solanum tuberosum	56.47	4.00e-19	85.90
IUUC-Sbi-114148	Sorghum bicolor	81.18	3.00e-38	148.00
IUUC-Sre-115216	Sporisorium reilianum	45.98	1.00e-20	91.30
IUUC-Ssc-116051	Sus scrofa	44.32	2.00e-17	80.90
IUUC-Tru-118466	Takifugu rubripes	42.68	8.00e-15	70.90
IUUC-Tsy-119334	Tarsius syrichta	43.18	8.00e-13	66.20
IUUC-Tni-119792	Tetraodon nigroviridis	42.68	3.00e-15	72.40
IUUC-Tca-121861	Theobroma cacao	88.64	4.00e-43	166.00
IUUC-Tvi-122499	Trichoderma virens	44.32	2.00e-14	70.50
IUUC-Tae-123431	Triticum aestivum	75.29	3.00e-36	142.00
IUUC-Tme-126934	Tuber melanosporum	36.96	2.00e-12	64.30
IUUC-Ttr-129001	Tursiops truncatus	40.23	9.00e-13	66.20
IUUC-Uma-129324	Ustilago maydis	48.28	2.00e-21	93.60
IUUC-Vda-129846	Verticillium dahliae	39.77	2.00e-12	64.30
IUUC-Vpa-130202	Vicugna pacos	57.50	4.00e-10	57.40
IUUC-Vvi-131474	Vitis vinifera	85.92	1.00e-31	127.00
IUUC-Xtr-132782	Xenopus tropicalis	45.45	3.00e-17	80.10
IUUC-Xma-134140	Xiphophorus maculatus	40.91	2.00e-14	70.90
IUUC-Yli-134517	Yarrowia lipolytica	40.00	2.00e-12	65.10
IUUC-Zma-134764	Zea mays	81.18	3.00e-38	149.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence