iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006944

UUCD1 version

UUC-ArT-00374

Ensembl Protein ID

AT4G09560.1

UniProt Accession

Q0WPW5; Q9M0N7; RMR4_ARATH

Genbank Protein ID

CAB78079.1; AEE82765.1; BAF00834.1

Protein Name

Receptor homology region, transmembrane domain- and RING domain-containing protein 4

Genbank Nucleotide ID

AL161515; CP002687; AK228945

Gene Name

RMR4; At4g09560; T15G18.20

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G09560	AT4G09560.1	AT4G09560.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	4.00e-06	28.1	234	276

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iCle +++g  +++lpC H fh  C+  w      ++k+f CP+C+
   Q: 234  CCICLENYEKGdkLRILPCHHKFHVACVDLW----LGQRKSF-CPVCK 276
           ********55444******************....7788888.****7 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Involved in the trafficking of vacuolar proteins. May function as a sorting receptor for protein trafficking to the protein storage vacuole (PSV) (By similarity).

Protein Sequence
(Fasta)

MIRSSIVILS LLLISHLVSA KVLLIGNSTS LSFDDVEATF TPMIKRSDQG GVLYVAEPLD 60
ACSDLVNTVN VKNGTTVSPP YVLIIRGGCS FEDKIRNAQK AGYKAAIVYD YEDFGFLVSM 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATAGTCTCTG GTCTCTTAAC TCGCCTTCTA TGGAAGCTCA AGTGTTTATA ATCTTCCATT 60
AAAACCCTAA AATACTTTTT CAATTTCTTC TTCCAATTTG CTTCTTTTCT CTTCCGATAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1015--Disulfide bond
KW-0325--Glycoprotein
KW-0472--Membrane
KW-0479--Metal-binding
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0732--Signal
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0813--Transport
KW-0926--Vacuole
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR003137--PA_domain
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF02225--PA
PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0031902--C:late endosome membrane
GO:0032586--C:protein storage vacuole membrane
GO:0008270--F:zinc ion binding
GO:0015031--P:protein transport

KEGG

ath:AT4G09560

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006487	Arabidopsis lyrata	88.06	0.00e+00	698.00
IUUC-Bol-016610	Brassica oleracea	71.50	6.00e-155	539.00
IUUC-Bra-017268	Brassica rapa	71.00	8.00e-154	535.00
IUUC-Cne-026954	Cryptococcus neoformans	48.15	2.00e-11	63.20
IUUC-Pma-094545	Petromyzon marinus	62.22	4.00e-16	75.10
IUUC-Pte-104044	Pyrenophora teres	47.62	1.00e-13	70.90
IUUC-Sja-107946	Schizosaccharomyces japonicus	52.17	3.00e-12	65.10
IUUC-Tme-127069	Tuber melanosporum	37.18	2.00e-11	62.80

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence