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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Rno-105784
Ensembl Protein ID ENSRNOP00000075829.1
UniProt Accession F1LY19; F1LY19_RAT
Genbank Protein ID EDL90680.1
Protein Name RCG38820; UPF1, RNA helicase and ATPase
Genbank Nucleotide ID AABR07072504
Gene Name Upf1; LOC684558; rCG_38820
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000020134.7 ENSRNOT00000092293.1 ENSRNOP00000075829.1
ENSRNOG00000020134.7 ENSRNOT00000092446.1 ENSRNOP00000075905.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
CPLMdbPAFPhosphositePlus
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 activity/Other 55.98 0.00e+00 971.00 IUUC-Sce-106206
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MSVEAYGPSS QTLTFLDTEE AELLGADTQG SEFEFTDFTL PSQTQTPPGG PGGAGGPGGA 60
GAGGAAGQLD AQVGPEGILQ NGAVDDSVAK TSQLLAELNF EEDEEDTYYT KDLPVHACSY 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105784|E3,E3 activity/Other|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GGCGGCGGCG GCGGTTCCTG TCCAGGGGGC TGAGAGCGGC GGTCGGCTTT GAGGCGAGCA 60
GCGTTGCGGA GGGGCGCGGC AGCGGCGGCG GCAACTCAGA GCTCGGAGCC GGAGTCCGGG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105784|E3,E3 activity/Other|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
Interpro

IPR006935--Helicase/UvrB_N
IPR027417--P-loop_NTPase
IPR018999--RNA-helicase_UPF1_UPF2-interct
Pfam

PF04851--ResIII
PF09416--UPF1_Zn_bind
Gene Ontology

GO:0005737--C:cytoplasm
GO:0005524--F:ATP binding
GO:0003677--F:DNA binding
GO:0004386--F:helicase activity
GO:0008270--F:zinc ion binding
GO:0000184--P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
KEGG rno:684558
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000680 Aegilops tauschii 69.39 0.00e+00 1178.00
IUUC-Aml-002008 Ailuropoda melanoleuca 96.63 0.00e+00 2115.00
IUUC-Atr-002632 Amborella trichopoda 67.69 0.00e+00 1273.00
IUUC-Apl-003997 Anas platyrhynchos 97.24 0.00e+00 2011.00
IUUC-Aca-004322 Anolis carolinensis 31.55 4.00e-54 206.00
IUUC-Aly-006521 Arabidopsis lyrata 71.69 0.00e+00 1253.00
IUUC-Ath-007059 Arabidopsis thaliana 71.45 0.00e+00 1254.00
IUUC-Ago-007801 Ashbya gossypii 55.70 0.00e+00 954.00
IUUC-Acl-008312 Aspergillus clavatus 69.06 0.00e+00 1196.00
IUUC-Afl-008429 Aspergillus flavus 68.18 0.00e+00 1195.00
IUUC-Afu-009092 Aspergillus fumigatus 63.93 0.00e+00 1195.00
IUUC-Ani-009317 Aspergillus nidulans 69.06 0.00e+00 1195.00
IUUC-Ang-009783 Aspergillus niger 60.02 0.00e+00 1198.00
IUUC-Aor-010178 Aspergillus oryzae 68.18 0.00e+00 1195.00
IUUC-Ate-010294 Aspergillus terreus 60.53 0.00e+00 1202.00
IUUC-Ame-010774 Astyanax mexicanus 73.26 0.00e+00 1211.00
IUUC-Bgr-012293 Blumeria graminis 67.41 0.00e+00 1189.00
IUUC-Bta-012382 Bos taurus 97.16 0.00e+00 2120.00
IUUC-Bci-013937 Botrytis cinerea 67.66 0.00e+00 1184.00
IUUC-Bdi-014612 Brachypodium distachyon 71.09 0.00e+00 1265.00
IUUC-Bol-015145 Brassica oleracea 70.62 0.00e+00 1244.00
IUUC-Bra-017370 Brassica rapa 69.18 0.00e+00 1209.00
IUUC-Cel-018240 Caenorhabditis elegans 59.06 0.00e+00 996.00
IUUC-Cja-019892 Callithrix jacchus 98.95 0.00e+00 2052.00
IUUC-Cfa-020700 Canis familiaris 96.99 0.00e+00 2119.00
IUUC-Cpo-021510 Cavia porcellus 96.37 0.00e+00 2149.00
IUUC-Cre-022731 Chlamydomonas reinhardtii 59.23 0.00e+00 994.00
IUUC-Csa-023665 Chlorocebus sabaeus 97.85 0.00e+00 2130.00
IUUC-Cin-025798 Ciona intestinalis 83.93 0.00e+00 1352.00
IUUC-Csv-025901 Ciona savignyi 72.20 0.00e+00 1613.00
IUUC-Cgl-026653 Colletotrichum gloeosporioides 64.59 0.00e+00 1159.00
IUUC-Cne-027014 Cryptococcus neoformans 63.85 0.00e+00 1204.00
IUUC-Dre-028705 Danio rerio 92.48 0.00e+00 2041.00
IUUC-Dor-030369 Dipodomys ordii 96.35 0.00e+00 1995.00
IUUC-Dme-031767 Drosophila melanogaster 71.00 0.00e+00 1406.00
IUUC-Ete-032800 Echinops telfairi 33.33 2.00e-53 204.00
IUUC-Eca-033840 Equus caballus 99.23 0.00e+00 2044.00
IUUC-Fca-035466 Felis catus 97.45 0.00e+00 2029.00
IUUC-Fal-037548 Ficedula albicollis 97.70 0.00e+00 1988.00
IUUC-Fox-038023 Fusarium oxysporum 58.85 0.00e+00 1147.00
IUUC-Gmo-039285 Gadus morhua 91.13 0.00e+00 1982.00
IUUC-Ggr-039810 Gaeumannomyces graminis 66.50 0.00e+00 1179.00
IUUC-Gga-040972 Gallus gallus 96.42 0.00e+00 2092.00
IUUC-Gac-042075 Gasterosteus aculeatus 90.88 0.00e+00 2006.00
IUUC-Gma-042713 Glycine max 72.29 0.00e+00 1298.00
IUUC-Ggo-045398 Gorilla gorilla 98.94 0.00e+00 2042.00
IUUC-Hsa-046152 Homo sapiens 97.94 0.00e+00 2130.00
IUUC-Hvu-047555 Hordeum vulgare 72.61 0.00e+00 733.00
IUUC-Itr-048247 Ictidomys tridecemlineatus 97.91 0.00e+00 1996.00
IUUC-Kpa-049205 Komagataella pastoris 48.54 0.00e+00 779.00
IUUC-Lch-049587 Latimeria chalumnae 96.27 0.00e+00 1309.00
IUUC-Lpe-051059 Leersia perrieri 72.91 0.00e+00 1270.00
IUUC-Loc-051911 Lepisosteus oculatus 93.27 0.00e+00 2043.00
IUUC-Lma-053007 Leptosphaeria maculans 61.43 0.00e+00 1164.00
IUUC-Laf-054234 Loxodonta africana 96.81 0.00e+00 2102.00
IUUC-Mcc-054762 Macaca mulatta 97.86 0.00e+00 2128.00
IUUC-Meu-056677 Macropus eugenii 93.14 0.00e+00 882.00
IUUC-Mor-057147 Magnaporthe oryzae 67.04 0.00e+00 1170.00
IUUC-Mpo-057314 Magnaporthe poae 66.50 0.00e+00 1179.00
IUUC-Mtr-058329 Medicago truncatula 72.29 0.00e+00 1297.00
IUUC-Mla-059094 Melampsora laricipopulina 67.49 0.00e+00 681.00
IUUC-Mga-060126 Meleagris gallopavo 96.77 0.00e+00 1991.00
IUUC-Mvi-060373 Microbotryum violaceum 67.45 0.00e+00 1275.00
IUUC-Mmr-060628 Microcebus murinus 97.78 0.00e+00 2131.00
IUUC-Mdo-061858 Monodelphis domestica 98.37 0.00e+00 2027.00
IUUC-Mmu-064116 Mus musculus 99.91 0.00e+00 2144.00
IUUC-Mac-065136 Musa acuminata 71.57 0.00e+00 1261.00
IUUC-Mpu-066463 Mustela putorius furo 97.94 0.00e+00 2128.00
IUUC-Mlu-068098 Myotis lucifugus 97.58 0.00e+00 2115.00
IUUC-Nfi-068370 Neosartorya fischeri 68.37 0.00e+00 1194.00
IUUC-Ncr-068792 Neurospora crassa 65.12 0.00e+00 1166.00
IUUC-Nle-070102 Nomascus leucogenys 98.85 0.00e+00 2035.00
IUUC-Opr-070620 Ochotona princeps 91.16 0.00e+00 1867.00
IUUC-Ont-072685 Oreochromis niloticus 91.75 0.00e+00 2007.00
IUUC-Oan-073665 Ornithorhynchus anatinus 95.57 0.00e+00 2087.00
IUUC-Ocu-074154 Oryctolagus cuniculus 33.41 2.00e-55 211.00
IUUC-Oba-075075 Oryza barthii 64.02 0.00e+00 1016.00
IUUC-Obr-076183 Oryza brachyantha 67.30 0.00e+00 1093.00
IUUC-Ogl-077691 Oryza glaberrima 68.72 0.00e+00 1269.00
IUUC-Ogu-078423 Oryza glumaepatula 68.72 0.00e+00 1268.00
IUUC-Oin-080107 Oryza indica 68.72 0.00e+00 1268.00
IUUC-Olo-080269 Oryza longistaminata 68.14 0.00e+00 1194.00
IUUC-Ome-081779 Oryza meridionalis 68.64 0.00e+00 1268.00
IUUC-Oni-082366 Oryza nivara 68.72 0.00e+00 1269.00
IUUC-Opu-083958 Oryza punctata 64.15 0.00e+00 1273.00
IUUC-Oru-084182 Oryza rufipogon 68.72 0.00e+00 1268.00
IUUC-Osa-085285 Oryza sativa 68.52 0.00e+00 1271.00
IUUC-Ola-086954 Oryzias latipes 89.12 0.00e+00 1979.00
IUUC-Olu-087685 Ostreococcus lucimarinus 57.47 0.00e+00 951.00
IUUC-Oga-088591 Otolemur garnettii 98.03 0.00e+00 2133.00
IUUC-Oar-089417 Ovis aries 95.30 0.00e+00 1970.00
IUUC-Ptr-091510 Pan troglodytes 97.27 0.00e+00 1863.00
IUUC-Pan-091886 Papio anubis 97.94 0.00e+00 2130.00
IUUC-Psi-093755 Pelodiscus sinensis 97.12 0.00e+00 1425.00
IUUC-Pma-094470 Petromyzon marinus 85.39 0.00e+00 1892.00
IUUC-Pno-094963 Phaeosphaeria nodorum 66.79 0.00e+00 1165.00
IUUC-Ppa-095479 Physcomitrella patens 72.28 0.00e+00 1298.00
IUUC-Pfo-097456 Poecilia formosa 91.74 0.00e+00 2014.00
IUUC-Pab-098075 Pongo abelii 90.61 0.00e+00 1935.00
IUUC-Pop-099557 Populus trichocarpa 62.16 0.00e+00 1285.00
IUUC-Pca-100717 Procavia capensis 100.00 2.00e-176 612.00
IUUC-Ppe-101675 Prunus persica 63.01 0.00e+00 1302.00
IUUC-Pva-103029 Pteropus vampyrus 97.66 0.00e+00 1387.00
IUUC-Pgr-103318 Puccinia graminis 64.30 0.00e+00 1214.00
IUUC-Ptt-103956 Puccinia triticina 63.28 0.00e+00 1214.00
IUUC-Pte-104399 Pyrenophora teres 62.14 0.00e+00 1175.00
IUUC-Pyt-104749 Pyrenophora triticirepentis 61.92 0.00e+00 1173.00
IUUC-Sce-106206 Saccharomyces cerevisiae 55.96 0.00e+00 941.00
IUUC-Sha-106566 Sarcophilus harrisii 97.15 0.00e+00 2015.00
IUUC-Sja-107721 Schizosaccharomyces japonicus 62.40 0.00e+00 1101.00
IUUC-Spo-108258 Schizosaccharomyces pombe 59.47 0.00e+00 1052.00
IUUC-Ssl-108640 Sclerotinia sclerotiorum 64.31 0.00e+00 1045.00
IUUC-Smo-109676 Selaginella moellendorffii 22.33 1.30e+00 28.50
IUUC-Sit-109760 Setaria italica 62.94 0.00e+00 1266.00
IUUC-Sly-111807 Solanum lycopersicum 73.04 0.00e+00 1302.00
IUUC-Stu-112869 Solanum tuberosum 67.47 0.00e+00 1295.00
IUUC-Sar-112950 Sorex araneus 38.31 2.00e-43 171.00
IUUC-Sbi-114863 Sorghum bicolor 73.33 0.00e+00 1267.00
IUUC-Sre-115092 Sporisorium reilianum 67.16 0.00e+00 1265.00
IUUC-Tgu-117214 Taeniopygia guttata 89.36 0.00e+00 1654.00
IUUC-Tru-118386 Takifugu rubripes 87.57 0.00e+00 1999.00
IUUC-Tsy-119550 Tarsius syrichta 98.94 2.00e-167 583.00
IUUC-Tni-120212 Tetraodon nigroviridis 89.18 0.00e+00 1907.00
IUUC-Tca-121353 Theobroma cacao 71.72 0.00e+00 1293.00
IUUC-Tre-122245 Trichoderma reesei 34.94 9.00e-53 202.00
IUUC-Tvi-122452 Trichoderma virens 57.16 0.00e+00 1117.00
IUUC-Tae-123692 Triticum aestivum 71.31 0.00e+00 1263.00
IUUC-Tur-126770 Triticum urartu 61.09 0.00e+00 1077.00
IUUC-Tme-126956 Tuber melanosporum 69.27 0.00e+00 1202.00
IUUC-Tbe-127873 Tupaia belangeri 33.89 4.00e-50 193.00
IUUC-Ttr-128212 Tursiops truncatus 94.18 0.00e+00 2006.00
IUUC-Uma-129327 Ustilago maydis 66.36 0.00e+00 1254.00
IUUC-Vda-129858 Verticillium dahliae 65.66 0.00e+00 1135.00
IUUC-Vpa-130743 Vicugna pacos 33.89 3.00e-51 197.00
IUUC-Vvi-131222 Vitis vinifera 72.41 0.00e+00 1273.00
IUUC-Xtr-131800 Xenopus tropicalis 81.76 0.00e+00 1727.00
IUUC-Xma-133216 Xiphophorus maculatus 91.56 0.00e+00 2010.00
IUUC-Yli-134482 Yarrowia lipolytica 54.14 0.00e+00 898.00
IUUC-Zma-134802 Zea mays 72.18 0.00e+00 1272.00
Created Date 25-Jun-2017

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