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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Rno-105997
Ensembl Protein ID ENSRNOP00000073574.1
UniProt Accession G3V6H2; G3V6H2_RAT
Genbank Protein ID EDM05220.1
Protein Name Pre-mRNA processing factor 8, isoform CRA_a; Pre-mRNA-processing factor 8
Genbank Nucleotide ID AABR07030039
Gene Name Prpf8; rCG_35600
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000003495.7 ENSRNOT00000081813.1 ENSRNOP00000073574.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
RAID2
Protein-protein Interaction
IID
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
UBD/Jab_MPN 62.21 0.00e+00 2943.00 IUUC-Sce-106157
UBD/Jab_MPN 62.17 0.00e+00 2942.00 IUUC-Ots-000011
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MAGVFPYRGP GNPVPGPLAP LPDYMSEEKL QEKARKWQQL QAKRYAEKRK FGFVDAQKED 60
MPPEHVRKII RDHGDMTNRK FRHDKRVYLG ALKYMPHAVL KLLENMPMPW EQIRDVPVLY 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105997|UBD,Jab_MPN|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TGAACCTGGT TGCGCACTTC CTGGAGTTGG GAACGCGGAG CGGACGTCGT CTTTCCGCCA 60
TTGCTCTGCG AGCCCTGCCG CTACCTAAGT GAGGGACGAC AGGTGGGTGG CGGGCGTCTG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105997|UBD,Jab_MPN|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
Interpro

IPR000555--JAMM/MPN+_dom
IPR012591--PRO8NT
IPR012592--PROCN
IPR012984--PROCT
IPR027652--PRP8
IPR021983--PRP8_domainIV
IPR019581--Prp8_U5-snRNA-bd
IPR019580--Prp8_U6-snRNA-bd
IPR012337--RNaseH-like_dom
IPR019582--RRM_spliceosomal_PrP8
Pfam

PF01398--JAB
PF08082--PRO8NT
PF08083--PROCN
PF08084--PROCT
PF12134--PRP8_domainIV
PF10598--RRM_4
PF10597--U5_2-snRNA_bdg
PF10596--U6-snRNA_bdg
SMART

SM00232--JAB_MPN
Gene Ontology

GO:0071013--C:catalytic step 2 spliceosome
GO:0016020--C:membrane
GO:0030532--C:small nuclear ribonucleoprotein complex
GO:0030623--F:U5 snRNA binding
GO:0017070--F:U6 snRNA binding
GO:0071222--P:cellular response to lipopolysaccharide
GO:0071356--P:cellular response to tumor necrosis factor
GO:0000244--P:spliceosomal tri-snRNP complex assembly
KEGG rno:287530
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001091 Aegilops tauschii 83.85 0.00e+00 3992.00
IUUC-Aml-002261 Ailuropoda melanoleuca 99.91 0.00e+00 4700.00
IUUC-Atr-002524 Amborella trichopoda 83.58 0.00e+00 4029.00
IUUC-Apl-004039 Anas platyrhynchos 99.47 0.00e+00 4494.00
IUUC-Aca-005394 Anolis carolinensis 97.81 0.00e+00 3705.00
IUUC-Aly-005909 Arabidopsis lyrata 82.79 0.00e+00 4005.00
IUUC-Ath-007237 Arabidopsis thaliana 83.65 0.00e+00 4029.00
IUUC-Ago-007815 Ashbya gossypii 62.20 0.00e+00 3036.00
IUUC-Acl-008111 Aspergillus clavatus 73.85 0.00e+00 3587.00
IUUC-Afl-008609 Aspergillus flavus 74.30 0.00e+00 2201.00
IUUC-Afu-009078 Aspergillus fumigatus 74.04 0.00e+00 2362.00
IUUC-Ani-009297 Aspergillus nidulans 72.98 0.00e+00 2321.00
IUUC-Ang-009749 Aspergillus niger 73.75 0.00e+00 3581.00
IUUC-Aor-010106 Aspergillus oryzae 73.79 0.00e+00 3584.00
IUUC-Ate-010566 Aspergillus terreus 73.93 0.00e+00 3587.00
IUUC-Ame-011416 Astyanax mexicanus 97.60 0.00e+00 4641.00
IUUC-Bgr-012078 Blumeria graminis 70.56 0.00e+00 2221.00
IUUC-Bta-013532 Bos taurus 99.91 0.00e+00 4700.00
IUUC-Bci-013914 Botrytis cinerea 73.57 0.00e+00 2339.00
IUUC-Bdi-014349 Brachypodium distachyon 83.66 0.00e+00 4031.00
IUUC-Bol-015707 Brassica oleracea 83.36 0.00e+00 4008.00
IUUC-Bra-017086 Brassica rapa 82.60 0.00e+00 3984.00
IUUC-Cel-018508 Caenorhabditis elegans 86.40 0.00e+00 4160.00
IUUC-Cja-019483 Callithrix jacchus 99.91 0.00e+00 4700.00
IUUC-Cfa-021018 Canis familiaris 99.91 0.00e+00 4700.00
IUUC-Cpo-022159 Cavia porcellus 99.91 0.00e+00 4700.00
IUUC-Cre-022998 Chlamydomonas reinhardtii 81.63 0.00e+00 3870.00
IUUC-Csa-023885 Chlorocebus sabaeus 99.91 0.00e+00 4700.00
IUUC-Cho-024639 Choloepus hoffmanni 94.42 0.00e+00 2586.00
IUUC-Cin-025356 Ciona intestinalis 84.06 0.00e+00 771.00
IUUC-Csv-025880 Ciona savignyi 91.24 0.00e+00 4335.00
IUUC-Cgl-026713 Colletotrichum gloeosporioides 70.93 0.00e+00 3431.00
IUUC-Cne-026874 Cryptococcus neoformans 75.37 0.00e+00 2239.00
IUUC-Cme-027252 Cyanidioschyzon merolae 33.78 0.00e+00 1012.00
IUUC-Dre-027996 Danio rerio 97.44 0.00e+00 4645.00
IUUC-Dno-029708 Dasypus novemcinctus 99.86 0.00e+00 4349.00
IUUC-Dor-030119 Dipodomys ordii 96.13 0.00e+00 4180.00
IUUC-Dse-031333 Dothistroma septosporum 72.98 0.00e+00 3492.00
IUUC-Dme-031908 Drosophila melanogaster 92.17 0.00e+00 4331.00
IUUC-Ete-032766 Echinops telfairi 94.43 0.00e+00 4432.00
IUUC-Eca-034109 Equus caballus 99.91 0.00e+00 4700.00
IUUC-Eeu-035094 Erinaceus europaeus 98.11 0.00e+00 2327.00
IUUC-Fca-035567 Felis catus 99.95 0.00e+00 3859.00
IUUC-Fal-036613 Ficedula albicollis 99.40 0.00e+00 4675.00
IUUC-Fox-037855 Fusarium oxysporum 72.26 0.00e+00 3507.00
IUUC-Fso-038078 Fusarium solani 71.96 0.00e+00 3490.00
IUUC-Gmo-038986 Gadus morhua 95.73 0.00e+00 4560.00
IUUC-Ggr-039855 Gaeumannomyces graminis 71.85 0.00e+00 3471.00
IUUC-Gga-040719 Gallus gallus 99.36 0.00e+00 4674.00
IUUC-Gac-042502 Gasterosteus aculeatus 97.42 0.00e+00 4614.00
IUUC-Gma-043317 Glycine max 83.45 0.00e+00 3999.00
IUUC-Ggo-045622 Gorilla gorilla 94.39 0.00e+00 4372.00
IUUC-Hsa-046060 Homo sapiens 99.91 0.00e+00 4700.00
IUUC-Hvu-047251 Hordeum vulgare 84.59 0.00e+00 3751.00
IUUC-Itr-048517 Ictidomys tridecemlineatus 100.00 0.00e+00 2467.00
IUUC-Kpa-049289 Komagataella pastoris 65.02 0.00e+00 3140.00
IUUC-Lch-049690 Latimeria chalumnae 95.98 0.00e+00 4246.00
IUUC-Lpe-050868 Leersia perrieri 82.52 0.00e+00 4005.00
IUUC-Loc-052365 Lepisosteus oculatus 97.77 0.00e+00 4650.00
IUUC-Lma-053043 Leptosphaeria maculans 73.27 0.00e+00 3579.00
IUUC-Laf-053582 Loxodonta africana 99.91 0.00e+00 4700.00
IUUC-Mcc-055024 Macaca mulatta 99.91 0.00e+00 4700.00
IUUC-Meu-056637 Macropus eugenii 97.96 0.00e+00 4514.00
IUUC-Mor-057244 Magnaporthe oryzae 71.88 0.00e+00 3442.00
IUUC-Mpo-057580 Magnaporthe poae 71.90 0.00e+00 3477.00
IUUC-Mtr-058326 Medicago truncatula 83.58 0.00e+00 4033.00
IUUC-Mla-059121 Melampsora laricipopulina 76.39 0.00e+00 3614.00
IUUC-Mga-059789 Meleagris gallopavo 99.36 0.00e+00 4674.00
IUUC-Mvi-060563 Microbotryum violaceum 74.32 0.00e+00 3607.00
IUUC-Mmr-060880 Microcebus murinus 98.80 0.00e+00 4640.00
IUUC-Mdo-062237 Monodelphis domestica 99.74 0.00e+00 4695.00
IUUC-Mmu-064177 Mus musculus 100.00 0.00e+00 4702.00
IUUC-Mac-065558 Musa acuminata 81.87 0.00e+00 3828.00
IUUC-Mpu-066903 Mustela putorius furo 99.91 0.00e+00 4700.00
IUUC-Mlu-067424 Myotis lucifugus 99.74 0.00e+00 4692.00
IUUC-Nfi-068265 Neosartorya fischeri 73.92 0.00e+00 2358.00
IUUC-Ncr-068963 Neurospora crassa 72.59 0.00e+00 3506.00
IUUC-Nle-069111 Nomascus leucogenys 99.18 0.00e+00 3244.00
IUUC-Opr-070706 Ochotona princeps 98.46 0.00e+00 4586.00
IUUC-Ont-071405 Oreochromis niloticus 98.36 0.00e+00 4633.00
IUUC-Oan-073481 Ornithorhynchus anatinus 99.53 0.00e+00 2204.00
IUUC-Ocu-074231 Oryctolagus cuniculus 99.91 0.00e+00 4700.00
IUUC-Oba-075452 Oryza barthii 83.90 0.00e+00 3966.00
IUUC-Obr-076377 Oryza brachyantha 83.94 0.00e+00 3966.00
IUUC-Ogl-077666 Oryza glaberrima 83.79 0.00e+00 4021.00
IUUC-Ogu-078187 Oryza glumaepatula 83.94 0.00e+00 3968.00
IUUC-Oin-079234 Oryza indica 83.85 0.00e+00 3966.00
IUUC-Olo-080543 Oryza longistaminata 83.94 0.00e+00 3968.00
IUUC-Ome-081541 Oryza meridionalis 83.15 0.00e+00 3986.00
IUUC-Oni-082712 Oryza nivara 85.41 0.00e+00 3199.00
IUUC-Opu-083904 Oryza punctata 83.42 0.00e+00 4010.00
IUUC-Oru-084749 Oryza rufipogon 83.62 0.00e+00 4022.00
IUUC-Osa-085504 Oryza sativa 85.79 0.00e+00 2056.00
IUUC-Ola-087464 Oryzias latipes 98.10 0.00e+00 4358.00
IUUC-Olu-087705 Ostreococcus lucimarinus 81.12 0.00e+00 3938.00
IUUC-Oga-087910 Otolemur garnettii 100.00 7.00e-75 271.00
IUUC-Oar-089892 Ovis aries 99.79 0.00e+00 4694.00
IUUC-Ptr-090562 Pan troglodytes 96.80 0.00e+00 917.00
IUUC-Pan-092555 Papio anubis 99.91 0.00e+00 4575.00
IUUC-Psi-094049 Pelodiscus sinensis 99.40 0.00e+00 4675.00
IUUC-Pma-094240 Petromyzon marinus 93.90 0.00e+00 4277.00
IUUC-Pno-095146 Phaeosphaeria nodorum 71.40 0.00e+00 3468.00
IUUC-Ppa-095776 Physcomitrella patens 83.59 0.00e+00 4024.00
IUUC-Pfo-097177 Poecilia formosa 98.18 0.00e+00 4629.00
IUUC-Pab-097961 Pongo abelii 99.91 0.00e+00 4700.00
IUUC-Pop-099731 Populus trichocarpa 83.45 0.00e+00 4026.00
IUUC-Pca-100655 Procavia capensis 99.65 0.00e+00 1631.00
IUUC-Ppe-101199 Prunus persica 81.71 0.00e+00 3925.00
IUUC-Pva-103175 Pteropus vampyrus 99.44 0.00e+00 3613.00
IUUC-Pgr-103467 Puccinia graminis 76.13 0.00e+00 3620.00
IUUC-Ptt-103770 Puccinia triticina 69.73 0.00e+00 3246.00
IUUC-Pte-104210 Pyrenophora teres 72.65 0.00e+00 3531.00
IUUC-Pyt-104572 Pyrenophora triticirepentis 72.80 0.00e+00 2295.00
IUUC-Sce-106157 Saccharomyces cerevisiae 61.64 0.00e+00 2996.00
IUUC-Sha-107355 Sarcophilus harrisii 99.70 0.00e+00 4693.00
IUUC-Sja-107760 Schizosaccharomyces japonicus 74.29 0.00e+00 3554.00
IUUC-Spo-108160 Schizosaccharomyces pombe 73.94 0.00e+00 3558.00
IUUC-Ssl-108519 Sclerotinia sclerotiorum 73.43 0.00e+00 2330.00
IUUC-Smo-109278 Selaginella moellendorffii 83.63 0.00e+00 4011.00
IUUC-Sit-110777 Setaria italica 83.75 0.00e+00 4041.00
IUUC-Sly-110889 Solanum lycopersicum 83.60 0.00e+00 4036.00
IUUC-Stu-112016 Solanum tuberosum 83.51 0.00e+00 4036.00
IUUC-Sar-113245 Sorex araneus 95.50 0.00e+00 2679.00
IUUC-Sbi-114423 Sorghum bicolor 84.89 0.00e+00 1830.00
IUUC-Sre-115077 Sporisorium reilianum 67.28 0.00e+00 3259.00
IUUC-Ssc-116211 Sus scrofa 99.64 0.00e+00 4479.00
IUUC-Tgu-116697 Taeniopygia guttata 99.40 0.00e+00 4675.00
IUUC-Tru-117984 Takifugu rubripes 97.26 0.00e+00 4635.00
IUUC-Tsy-118893 Tarsius syrichta 99.87 0.00e+00 1550.00
IUUC-Tni-120620 Tetraodon nigroviridis 98.69 0.00e+00 3422.00
IUUC-Tca-121331 Theobroma cacao 83.75 0.00e+00 4016.00
IUUC-Tre-122031 Trichoderma reesei 72.86 0.00e+00 3504.00
IUUC-Tvi-122603 Trichoderma virens 72.43 0.00e+00 3487.00
IUUC-Tae-125167 Triticum aestivum 83.70 0.00e+00 4043.00
IUUC-Tur-126772 Triticum urartu 83.63 0.00e+00 3987.00
IUUC-Tme-126899 Tuber melanosporum 73.61 0.00e+00 3579.00
IUUC-Tbe-127364 Tupaia belangeri 99.93 0.00e+00 2973.00
IUUC-Ttr-129009 Tursiops truncatus 99.31 0.00e+00 4666.00
IUUC-Vda-130015 Verticillium dahliae 71.16 0.00e+00 2285.00
IUUC-Vpa-130769 Vicugna pacos 93.59 0.00e+00 1112.00
IUUC-Vvi-131030 Vitis vinifera 83.41 0.00e+00 3989.00
IUUC-Xtr-132067 Xenopus tropicalis 98.80 0.00e+00 4644.00
IUUC-Xma-134252 Xiphophorus maculatus 98.05 0.00e+00 4625.00
IUUC-Yli-134434 Yarrowia lipolytica 65.77 0.00e+00 3156.00
IUUC-Zma-134994 Zea mays 83.57 0.00e+00 4019.00
Created Date 25-Jun-2017

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