iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	4.20e-08	34.1	415	458

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 3    vClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
            C +Cg  g     l++C+ C  ++H +C +   +   p+  +w+Cp+C+
   Q: 415  ECRLCGMDGT----LLCCDGCPLAYHSRCIGVV-KMYIPDG-PWYCPECT 458
           6999999998....******************9.*******.6******7 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MEGKVAKPRG RPRKRPRPED LNGVSNRGKR PVFEVKVAVP RSLLGRYVLK DVDDSGVFLG 60
KIVSYNTGLY RVEYEDGDFE DLETCYLRQL IIGDSYFDDE LRARRSKLDD FILKKDEKKK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGGGTAACCC GCATCCCGAG TTGAACTCAG TTTAACAATT AGACCACAAA AATCTGCCAT 60
TAACTCAGAA GTGAGAAGTG TAGTAGAACC ATTCGACACG ATTGAAAAAG CTCATCTTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR018501--DDT_dom
IPR018247--EF_Hand_1_Ca_BS
IPR028942--WHIM1_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50827--DDT
PS00018--EF_HAND_1
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF02791--DDT
PF00628--PHD
PF15612--WHIM1

SMART

SM00571--DDT
SM00249--PHD

Gene Ontology

GO:0008270--F:zinc ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000221	Aegilops tauschii	33.27	9.00e-138	484.00
IUUC-Atr-002497	Amborella trichopoda	35.61	2.00e-127	450.00
IUUC-Bol-016146	Brassica oleracea	77.47	0.00e+00	2442.00
IUUC-Bra-017694	Brassica rapa	79.33	0.00e+00	2420.00
IUUC-Dse-031258	Dothistroma septosporum	40.79	4.00e-07	50.10
IUUC-Fso-038262	Fusarium solani	45.10	9.00e-10	59.30
IUUC-Gma-043696	Glycine max	44.54	0.00e+00	1232.00
IUUC-Hvu-047397	Hordeum vulgare	33.21	1.00e-139	491.00
IUUC-Lpe-051272	Leersia perrieri	29.98	3.00e-108	386.00
IUUC-Mtr-058339	Medicago truncatula	43.58	0.00e+00	967.00
IUUC-Mac-065252	Musa acuminata	39.63	1.00e-179	623.00
IUUC-Oba-075125	Oryza barthii	32.44	2.00e-142	500.00
IUUC-Ogl-077936	Oryza glaberrima	32.44	2.00e-142	500.00
IUUC-Ogu-078676	Oryza glumaepatula	32.53	8.00e-143	501.00
IUUC-Oin-079426	Oryza indica	29.37	2.00e-106	380.00
IUUC-Olo-080881	Oryza longistaminata	29.76	1.00e-110	394.00
IUUC-Ome-081742	Oryza meridionalis	29.76	1.00e-111	397.00
IUUC-Oni-082756	Oryza nivara	29.67	5.00e-107	382.00
IUUC-Opu-083405	Oryza punctata	32.62	3.00e-141	496.00
IUUC-Oru-084745	Oryza rufipogon	32.53	2.00e-142	500.00
IUUC-Pop-099219	Populus trichocarpa	48.09	0.00e+00	878.00
IUUC-Sly-111813	Solanum lycopersicum	41.39	0.00e+00	1078.00
IUUC-Tca-121553	Theobroma cacao	52.00	0.00e+00	955.00
IUUC-Tre-121959	Trichoderma reesei	33.62	2.00e-10	61.20
IUUC-Tvi-122553	Trichoderma virens	38.96	2.00e-10	60.80
IUUC-Tae-125025	Triticum aestivum	33.92	3.00e-147	516.00
IUUC-Tur-125978	Triticum urartu	43.16	4.00e-106	379.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence