iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007390

UUCD1 version

UUC-ArT-00303

Ensembl Protein ID

AT2G35000.1

UniProt Accession

O64763; Q4TU26; ATL9_ARATH

Genbank Protein ID

AAY57596.1; AAC12839.1; AEC09047.1; AAU84670.1; AAV43794.1; BAF00709.1

Protein Name

E3 ubiquitin-protein ligase ATL9; RING-H2 finger protein ATL9; RING-type E3 ubiquitin transferase ATL9

Genbank Nucleotide ID

DQ059110; AC004238; CP002685; BT015733; BT020192; AK228813

Gene Name

ATL9; At2g35000; F19I3.23

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT2G35000	AT2G35000.1	AT2G35000.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	16339806; 21203445

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	1.90e-06	29.2	135	177

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           Ca+Cl++f  ++ ++++p C HvfhadC+  w       s + +CPlCr
   Q: 135  CAVCLCEFedDETLRLMPpCCHVFHADCVDVW------LSEHSTCPLCR 177
           ********65333888888*************......**********8 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. May be involved in the early steps of the plant defense signaling pathway.

Protein Sequence
(Fasta)

MAILDTKSSR WIPHNLLFLL LLLLLQSVPY GFGQTQTTPP GTTKTKPNDP VVVVITVLFL 60
VIFFMVFGSI FCRRSNAQFS RSSIFRSTDA DAESQVVRIR RLTARGLDAE AIETFPTFLY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAAAAACAAT TGTTAGGATT TTTAATTAAA ATCTCTATAT ACTAATCATT TCTAAGAGAT 60
TGTCACCACT AATTGTATAG TAGTGAAAGT TTTCATCTTT AGAAGTGGTG TTATTTCCTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-0611--Plant defense
KW-1185--Reference proteome
KW-0732--Signal
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0050832--P:defense response to fungus
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0016567--P:protein ubiquitination
GO:0010200--P:response to chitin

KEGG

ath:AT2G35000

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006100	Arabidopsis lyrata	91.82	1.00e-140	493.00
IUUC-Bol-016520	Brassica oleracea	67.28	3.00e-104	370.00
IUUC-Bra-018027	Brassica rapa	67.80	3.00e-104	371.00
IUUC-Olo-080975	Oryza longistaminata	37.44	3.00e-28	118.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence